Variant report

Variant	rs6822924
Chromosome Location	chr4:174112087-174112088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:174111282..174114186-chr4:174114823..174117851,4	K562	blood:
2	chr4:174105689..174108453-chr4:174111352..174113074,2	K562	blood:
3	chr4:174087959..174091632-chr4:174112021..174114740,3	MCF-7	breast:
4	chr4:174094346..174096240-chr4:174110007..174112423,2	K562	blood:
5	chr4:174111619..174113962-chr4:174147464..174149015,2	K562	blood:
6	chr4:174110382..174112789-chr4:174141810..174144337,2	K562	blood:
7	chr4:174105689..174108523-chr4:174110844..174113074,3	K562	blood:
8	chr4:174087944..174091003-chr4:174108604..174112195,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000109586	Chromatin interaction
ENSG00000245213	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10005325	0.88[EUR][1000 genomes]
rs10471199	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10520255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10520256	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs11722807	0.83[JPT][hapmap]
rs11731262	0.83[JPT][hapmap]
rs11734517	0.83[JPT][hapmap]
rs11942280	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13102038	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13116270	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs13117810	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13120215	0.95[EUR][1000 genomes]
rs13123359	0.90[EUR][1000 genomes]
rs13123399	0.86[CEU][hapmap]
rs13124470	0.93[CEU][hapmap]
rs13141844	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs13142524	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13150320	0.85[CEU][hapmap]
rs13151627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059153	0.86[CHB][hapmap]
rs17059205	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs17059207	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs17059217	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs17059235	0.86[CEU][hapmap]
rs1991726	0.86[CEU][hapmap]
rs2332657	0.96[EUR][1000 genomes]
rs2332658	0.93[CEU][hapmap];0.96[EUR][1000 genomes]
rs28361970	0.91[EUR][1000 genomes]
rs28413646	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28694391	0.81[EUR][1000 genomes]
rs34285915	0.81[EUR][1000 genomes]
rs34718403	0.95[EUR][1000 genomes]
rs35576170	0.87[EUR][1000 genomes]
rs35644315	0.85[EUR][1000 genomes]
rs35679682	0.81[EUR][1000 genomes]
rs35730812	0.84[EUR][1000 genomes]
rs36050097	0.87[EUR][1000 genomes]
rs3775590	0.83[JPT][hapmap]
rs3775591	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4380500	0.84[EUR][1000 genomes]
rs4608791	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs4695827	0.90[EUR][1000 genomes]
rs4695829	0.89[CHB][hapmap];0.92[JPT][hapmap]
rs4696050	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696054	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs61241252	0.80[ASN][1000 genomes]
rs62341096	0.83[EUR][1000 genomes]
rs6553686	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs6835517	0.81[CEU][hapmap]
rs6842693	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6858043	0.91[EUR][1000 genomes]
rs722826	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs722827	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7661977	0.95[EUR][1000 genomes]
rs7664847	0.83[JPT][hapmap]
rs7665469	0.92[JPT][hapmap]
rs7667345	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs7668435	0.89[CHB][hapmap];0.92[JPT][hapmap]
rs7668473	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs7669267	0.81[CEU][hapmap]
rs7672055	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs7673747	0.91[EUR][1000 genomes]
rs7686909	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs7689781	0.81[CEU][hapmap]
rs9685410	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs9991863	0.96[EUR][1000 genomes]
rs9995556	0.92[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799519	chr4:174090004-174173743	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174091600-174113600	Weak transcription	Esophagus	oesophagus
2	chr4:174100000-174112200	Weak transcription	Brain Substantia Nigra	brain
3	chr4:174104000-174112400	Weak transcription	Aorta	Aorta
4	chr4:174104000-174112400	Weak transcription	Brain Anterior Caudate	brain
5	chr4:174104000-174112600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:174104000-174157200	Weak transcription	Ovary	ovary
7	chr4:174104200-174112200	Weak transcription	Hela-S3	cervix
8	chr4:174104600-174112600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:174105000-174116400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:174106600-174114200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr4:174107000-174112200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:174107000-174117800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr4:174107200-174112200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr4:174107400-174112200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:174107400-174120800	Weak transcription	Fetal Muscle Leg	muscle
16	chr4:174107600-174112200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr4:174107600-174112600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr4:174107600-174115400	Weak transcription	Primary B cells from cord blood	blood
19	chr4:174107600-174115400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr4:174107800-174112400	Weak transcription	Primary T cells from cord blood	blood
21	chr4:174107800-174116200	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr4:174108000-174112800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:174108000-174113800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr4:174108600-174114200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr4:174108800-174126800	Weak transcription	Spleen	Spleen
26	chr4:174109000-174112400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr4:174109000-174112600	Weak transcription	GM12878-XiMat	blood
28	chr4:174109000-174116600	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr4:174109200-174112400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:174109200-174112400	Weak transcription	NHEK	skin
31	chr4:174109200-174112600	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr4:174109400-174112200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr4:174109400-174113000	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr4:174109600-174112600	Weak transcription	NHDF-Ad	bronchial
35	chr4:174109800-174112400	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr4:174110000-174113200	Weak transcription	Primary hematopoietic stem cells	blood
37	chr4:174110200-174112400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr4:174110200-174112400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr4:174110200-174112400	Weak transcription	Gastric	stomach
40	chr4:174110200-174112400	Weak transcription	Pancreas	Pancrea
41	chr4:174110200-174116400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr4:174110200-174118800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:174110400-174112400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr4:174110400-174112400	Weak transcription	K562	blood
45	chr4:174110400-174112600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:174110600-174112400	Weak transcription	HSMMtube	muscle
47	chr4:174110600-174113800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr4:174110600-174117000	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr4:174110800-174112400	Weak transcription	Osteobl	bone
50	chr4:174110800-174112600	Weak transcription	HSMM	muscle

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