Variant report

Variant	rs6858043
Chromosome Location	chr4:174140327-174140328
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174139419..174141243-chr4:174143719..174145852,2	K562	blood:
2	chr4:174138653..174140508-chr4:174254407..174256256,2	K562	blood:
3	chr4:174134665..174137165-chr4:174138818..174141532,2	K562	blood:
4	chr4:174138498..174140984-chr4:174142749..174145611,3	K562	blood:

Variant related genes	Relation type
ENSG00000164104	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10005325	0.94[EUR][1000 genomes]
rs10024603	0.87[AMR][1000 genomes]
rs10520255	0.90[EUR][1000 genomes]
rs10520256	0.90[EUR][1000 genomes]
rs11942280	0.91[EUR][1000 genomes]
rs13102038	0.91[EUR][1000 genomes]
rs13116270	0.90[EUR][1000 genomes]
rs13117810	0.87[EUR][1000 genomes]
rs13120215	0.86[EUR][1000 genomes]
rs13123359	0.82[EUR][1000 genomes]
rs13141844	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13142524	0.91[EUR][1000 genomes]
rs13151627	0.91[EUR][1000 genomes]
rs17059205	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17059207	0.90[EUR][1000 genomes]
rs17059217	0.87[EUR][1000 genomes]
rs2332657	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2332658	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28361970	0.90[EUR][1000 genomes]
rs28413646	0.87[EUR][1000 genomes]
rs28694391	0.86[EUR][1000 genomes]
rs34285915	0.80[EUR][1000 genomes]
rs34718403	0.86[EUR][1000 genomes]
rs35644315	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35679682	0.86[EUR][1000 genomes]
rs35730812	0.83[EUR][1000 genomes]
rs35796775	0.85[EUR][1000 genomes]
rs4380500	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4608791	0.86[EUR][1000 genomes]
rs4695827	0.88[EUR][1000 genomes]
rs4696050	0.86[EUR][1000 genomes]
rs4696054	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6553686	0.87[EUR][1000 genomes]
rs6822924	0.91[EUR][1000 genomes]
rs722826	0.82[EUR][1000 genomes]
rs722827	0.82[EUR][1000 genomes]
rs7661977	0.86[EUR][1000 genomes]
rs7667345	0.83[EUR][1000 genomes]
rs7668473	0.89[EUR][1000 genomes]
rs7673747	0.90[EUR][1000 genomes]
rs9685410	0.86[EUR][1000 genomes]
rs9991863	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9995556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799519	chr4:174090004-174173743	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv518900	chr4:174130503-174142874	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174104000-174157200	Weak transcription	Ovary	ovary
2	chr4:174114200-174157800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:174114600-174155000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:174123600-174174200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr4:174125600-174144800	Weak transcription	Primary B cells from cord blood	blood
6	chr4:174126000-174156400	Weak transcription	Brain Anterior Caudate	brain
7	chr4:174126400-174149800	Weak transcription	Esophagus	oesophagus
8	chr4:174126600-174155200	Weak transcription	GM12878-XiMat	blood
9	chr4:174126600-174163400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr4:174127000-174148600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr4:174127000-174163600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr4:174127000-174163600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr4:174127400-174149000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:174128200-174169200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr4:174131200-174147800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:174131800-174156400	Weak transcription	Fetal Intestine Small	intestine
17	chr4:174131800-174168600	Weak transcription	Gastric	stomach
18	chr4:174132800-174150600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr4:174135800-174146800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:174136600-174158400	Weak transcription	Fetal Muscle Leg	muscle
21	chr4:174136800-174157200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr4:174137200-174143200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr4:174138200-174140400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr4:174138200-174140400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr4:174138200-174140400	Enhancers	NHEK	skin
26	chr4:174138200-174140600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr4:174138200-174140600	Enhancers	Dnd41	blood
28	chr4:174138400-174140400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:174138400-174140400	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr4:174138400-174140400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr4:174138400-174140400	Enhancers	HMEC	breast
32	chr4:174138400-174140400	Enhancers	Osteobl	bone
33	chr4:174138400-174140600	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr4:174138400-174140600	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr4:174138400-174140600	Enhancers	Hela-S3	cervix
36	chr4:174138400-174140600	Enhancers	HSMM	muscle
37	chr4:174138400-174140600	Enhancers	HUVEC	blood vessel
38	chr4:174138400-174140800	Flanking Active TSS	K562	blood
39	chr4:174138600-174140400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr4:174138600-174140600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr4:174138600-174140600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr4:174138800-174140400	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr4:174138800-174140400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr4:174138800-174140400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr4:174138800-174140400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr4:174138800-174140400	Enhancers	NHDF-Ad	bronchial
47	chr4:174138800-174140600	Enhancers	HSMMtube	muscle
48	chr4:174138800-174141000	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr4:174139000-174140600	Enhancers	H1 Cell Line	embryonic stem cell
50	chr4:174139000-174157600	Weak transcription	Rectal Smooth Muscle	rectum

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