Variant report

Variant	rs7667345
Chromosome Location	chr4:174121750-174121751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174117685..174120092-chr4:174121042..174123290,2	K562	blood:
2	chr4:174119503..174121790-chr4:174173347..174175421,2	K562	blood:
3	chr4:174117968..174119559-chr4:174121744..174124525,2	MCF-7	breast:
4	chr4:174120841..174123019-chr4:174137354..174139118,2	K562	blood:
5	chr4:174121153..174123700-chr4:174130402..174133173,2	K562	blood:
6	chr4:174119750..174122089-chr4:174134389..174136257,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10005325	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10520255	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs10520256	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11942280	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs13102038	0.84[EUR][1000 genomes]
rs13116270	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13120215	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13123359	0.83[EUR][1000 genomes]
rs13123399	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13124470	0.92[CEU][hapmap]
rs13141844	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs13142524	0.84[EUR][1000 genomes]
rs13150231	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13150320	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13151627	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs17059205	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs17059207	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs17059217	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17059234	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17059235	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1991726	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2332657	0.87[EUR][1000 genomes]
rs2332658	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs28361970	0.92[EUR][1000 genomes]
rs28694391	0.80[EUR][1000 genomes]
rs34285915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34718403	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35576170	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35679682	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35730812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35796775	0.88[AMR][1000 genomes]
rs36050097	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4608791	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs4695827	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4696054	0.93[CEU][hapmap]
rs62341096	0.91[EUR][1000 genomes]
rs62342296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62342297	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6553686	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs6822924	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs6858043	0.83[EUR][1000 genomes]
rs722826	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs722827	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs7661977	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7668473	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7673747	0.92[EUR][1000 genomes]
rs7681286	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9685410	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs9991863	0.87[EUR][1000 genomes]
rs9995556	0.92[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799519	chr4:174090004-174173743	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174104000-174157200	Weak transcription	Ovary	ovary
2	chr4:174108800-174126800	Weak transcription	Spleen	Spleen
3	chr4:174112600-174131200	Weak transcription	Colonic Mucosa	Colon
4	chr4:174112800-174122800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:174112800-174126200	Weak transcription	Pancreas	Pancrea
6	chr4:174112800-174126400	Weak transcription	Gastric	stomach
7	chr4:174112800-174127000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:174112800-174140000	Weak transcription	Aorta	Aorta
9	chr4:174113400-174132600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:174113800-174126200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr4:174113800-174138000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:174114000-174123600	Weak transcription	Fetal Intestine Large	intestine
13	chr4:174114000-174125400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr4:174114000-174130800	Weak transcription	Brain Substantia Nigra	brain
15	chr4:174114200-174123200	Weak transcription	Fetal Intestine Small	intestine
16	chr4:174114200-174125200	Weak transcription	Small Intestine	intestine
17	chr4:174114200-174125600	Weak transcription	A549	lung
18	chr4:174114200-174125800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:174114200-174126200	Weak transcription	Esophagus	oesophagus
20	chr4:174114200-174127000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr4:174114200-174157800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr4:174114400-174124200	Weak transcription	Fetal Thymus	thymus
23	chr4:174114400-174125200	Weak transcription	Primary T cells from cord blood	blood
24	chr4:174114600-174155000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr4:174115200-174127200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr4:174116800-174126200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr4:174116800-174126400	Weak transcription	HSMM	muscle
28	chr4:174116800-174135200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr4:174117000-174122800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr4:174117000-174123400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr4:174117000-174123400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr4:174117000-174123400	Weak transcription	K562	blood
33	chr4:174117000-174124600	Weak transcription	Primary B cells from peripheral blood	blood
34	chr4:174117000-174126000	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr4:174117000-174127800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr4:174117000-174130800	Weak transcription	Brain Angular Gyrus	brain
37	chr4:174117200-174122400	Weak transcription	Primary B cells from cord blood	blood
38	chr4:174117200-174125200	Weak transcription	Dnd41	blood
39	chr4:174117600-174126000	Weak transcription	Thymus	Thymus
40	chr4:174119000-174126200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr4:174119200-174126000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr4:174120400-174131200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr4:174120600-174126000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr4:174120800-174125200	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr4:174120800-174126000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr4:174120800-174126000	Weak transcription	Lung	lung
47	chr4:174120800-174127200	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr4:174121000-174126000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr4:174121400-174122000	Enhancers	Fetal Heart	heart
50	chr4:174121600-174121800	Weak transcription	Muscle Satellite Cultured Cells	--

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