Variant report

Variant	rs4695827
Chromosome Location	chr4:174117306-174117307
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174111282..174114186-chr4:174114823..174117851,4	K562	blood:
2	chr4:174089089..174091226-chr4:174116772..174119184,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109586	Chromatin interaction
ENSG00000245213	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10005325	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10520255	0.90[EUR][1000 genomes]
rs10520256	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11942280	0.90[EUR][1000 genomes]
rs13102038	0.90[EUR][1000 genomes]
rs13116270	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13117810	0.86[EUR][1000 genomes]
rs13120215	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13123359	0.90[EUR][1000 genomes]
rs13123399	0.81[AMR][1000 genomes]
rs13141844	0.89[EUR][1000 genomes]
rs13142524	0.90[EUR][1000 genomes]
rs13150231	0.81[AMR][1000 genomes]
rs13151627	0.90[EUR][1000 genomes]
rs17059205	0.93[EUR][1000 genomes]
rs17059207	0.97[EUR][1000 genomes]
rs17059217	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17059234	0.81[AMR][1000 genomes]
rs17059235	0.83[AMR][1000 genomes]
rs1991726	0.81[AMR][1000 genomes]
rs2332657	0.93[EUR][1000 genomes]
rs2332658	0.93[EUR][1000 genomes]
rs28361970	0.97[EUR][1000 genomes]
rs28413646	0.87[EUR][1000 genomes]
rs28694391	0.86[EUR][1000 genomes]
rs34285915	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34718403	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35576170	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35644315	0.81[EUR][1000 genomes]
rs35679682	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35730812	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35796775	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36050097	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4380500	0.81[EUR][1000 genomes]
rs4608791	0.86[EUR][1000 genomes]
rs4696050	0.86[EUR][1000 genomes]
rs4696054	0.82[EUR][1000 genomes]
rs62341096	0.82[EUR][1000 genomes]
rs62342296	0.81[AMR][1000 genomes]
rs62342297	0.83[AMR][1000 genomes]
rs6553686	0.88[EUR][1000 genomes]
rs6822924	0.90[EUR][1000 genomes]
rs6858043	0.88[EUR][1000 genomes]
rs722826	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs722827	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7661977	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7667345	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7668473	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7673747	0.97[EUR][1000 genomes]
rs7681286	0.81[AMR][1000 genomes]
rs9685410	0.86[EUR][1000 genomes]
rs9991863	0.93[EUR][1000 genomes]
rs9995556	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799519	chr4:174090004-174173743	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174104000-174157200	Weak transcription	Ovary	ovary
2	chr4:174107000-174117800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:174107400-174120800	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:174108800-174126800	Weak transcription	Spleen	Spleen
5	chr4:174110200-174118800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:174112600-174131200	Weak transcription	Colonic Mucosa	Colon
7	chr4:174112800-174122800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:174112800-174126200	Weak transcription	Pancreas	Pancrea
9	chr4:174112800-174126400	Weak transcription	Gastric	stomach
10	chr4:174112800-174127000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr4:174112800-174140000	Weak transcription	Aorta	Aorta
12	chr4:174113000-174120400	Weak transcription	HSMMtube	muscle
13	chr4:174113400-174117400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:174113400-174132600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:174113800-174126200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr4:174113800-174138000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr4:174114000-174123600	Weak transcription	Fetal Intestine Large	intestine
18	chr4:174114000-174125400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr4:174114000-174130800	Weak transcription	Brain Substantia Nigra	brain
20	chr4:174114200-174120400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr4:174114200-174120400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr4:174114200-174123200	Weak transcription	Fetal Intestine Small	intestine
23	chr4:174114200-174125200	Weak transcription	Small Intestine	intestine
24	chr4:174114200-174125600	Weak transcription	A549	lung
25	chr4:174114200-174125800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr4:174114200-174126200	Weak transcription	Esophagus	oesophagus
27	chr4:174114200-174127000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr4:174114200-174157800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr4:174114400-174124200	Weak transcription	Fetal Thymus	thymus
30	chr4:174114400-174125200	Weak transcription	Primary T cells from cord blood	blood
31	chr4:174114600-174155000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr4:174115200-174127200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr4:174116400-174117600	Enhancers	Thymus	Thymus
34	chr4:174116600-174118800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr4:174116600-174120200	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr4:174116800-174120000	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr4:174116800-174120200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr4:174116800-174120200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr4:174116800-174126200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr4:174116800-174126400	Weak transcription	HSMM	muscle
41	chr4:174116800-174135200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr4:174117000-174120200	Weak transcription	Brain Anterior Caudate	brain
43	chr4:174117000-174122800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr4:174117000-174123400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr4:174117000-174123400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:174117000-174123400	Weak transcription	K562	blood
47	chr4:174117000-174124600	Weak transcription	Primary B cells from peripheral blood	blood
48	chr4:174117000-174126000	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr4:174117000-174127800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr4:174117000-174130800	Weak transcription	Brain Angular Gyrus	brain

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