Variant report

Variant	rs13102038
Chromosome Location	chr4:174108459-174108460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174105689..174108523-chr4:174110844..174113074,3	K562	blood:
2	chr4:174107501..174109531-chr4:174134790..174137729,2	K562	blood:
3	chr4:174089462..174093511-chr4:174101322..174108928,6	MCF-7	breast:
4	chr4:174103017..174104985-chr4:174106308..174108785,2	K562	blood:
5	chr4:174107114..174109913-chr4:174122414..174125175,2	K562	blood:

Variant related genes	Relation type
ENSG00000245213	Chromatin interaction
ENSG00000109586	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10005325	0.88[EUR][1000 genomes]
rs10520255	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10520256	0.91[EUR][1000 genomes]
rs11932721	0.93[ASN][1000 genomes]
rs11942280	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13116270	0.91[EUR][1000 genomes]
rs13117810	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13120215	0.95[EUR][1000 genomes]
rs13123359	0.90[EUR][1000 genomes]
rs13141844	0.93[EUR][1000 genomes]
rs13142524	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13151627	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17059205	0.96[EUR][1000 genomes]
rs17059207	0.91[EUR][1000 genomes]
rs17059217	0.82[EUR][1000 genomes]
rs2332657	0.96[EUR][1000 genomes]
rs2332658	0.96[EUR][1000 genomes]
rs28361970	0.91[EUR][1000 genomes]
rs28413646	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28694391	0.81[EUR][1000 genomes]
rs34285915	0.81[EUR][1000 genomes]
rs34718403	0.95[EUR][1000 genomes]
rs35576170	0.87[EUR][1000 genomes]
rs35644315	0.85[EUR][1000 genomes]
rs35679682	0.81[EUR][1000 genomes]
rs35730812	0.84[EUR][1000 genomes]
rs36050097	0.87[EUR][1000 genomes]
rs4380500	0.84[EUR][1000 genomes]
rs4608791	0.81[EUR][1000 genomes]
rs4695827	0.90[EUR][1000 genomes]
rs4696050	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4696054	0.85[EUR][1000 genomes]
rs58146016	0.93[ASN][1000 genomes]
rs61699413	0.93[ASN][1000 genomes]
rs62341096	0.83[EUR][1000 genomes]
rs6553686	0.82[EUR][1000 genomes]
rs6822924	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6858043	0.91[EUR][1000 genomes]
rs722826	0.90[EUR][1000 genomes]
rs722827	0.90[EUR][1000 genomes]
rs72993778	0.93[ASN][1000 genomes]
rs72993792	0.93[ASN][1000 genomes]
rs72995605	0.93[ASN][1000 genomes]
rs72995608	0.93[ASN][1000 genomes]
rs72997695	0.87[ASN][1000 genomes]
rs72997696	0.87[ASN][1000 genomes]
rs7661977	0.95[EUR][1000 genomes]
rs7667345	0.84[EUR][1000 genomes]
rs7668473	0.90[EUR][1000 genomes]
rs7673747	0.91[EUR][1000 genomes]
rs9685410	0.81[EUR][1000 genomes]
rs9991863	0.96[EUR][1000 genomes]
rs9995556	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799519	chr4:174090004-174173743	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174091600-174113600	Weak transcription	Esophagus	oesophagus
2	chr4:174092800-174109000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:174093600-174109800	Weak transcription	Gastric	stomach
4	chr4:174095000-174109400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:174096200-174111200	Weak transcription	Small Intestine	intestine
6	chr4:174099000-174109400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:174099200-174111200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:174100000-174112200	Weak transcription	Brain Substantia Nigra	brain
9	chr4:174103600-174109400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr4:174104000-174109400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:174104000-174109400	Weak transcription	Pancreas	Pancrea
12	chr4:174104000-174109400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr4:174104000-174112400	Weak transcription	Aorta	Aorta
14	chr4:174104000-174112400	Weak transcription	Brain Anterior Caudate	brain
15	chr4:174104000-174112600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:174104000-174157200	Weak transcription	Ovary	ovary
17	chr4:174104200-174108800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:174104200-174112200	Weak transcription	Hela-S3	cervix
19	chr4:174104400-174108600	Weak transcription	Osteobl	bone
20	chr4:174104600-174108600	Weak transcription	NHEK	skin
21	chr4:174104600-174108800	Weak transcription	HMEC	breast
22	chr4:174104600-174108800	Weak transcription	NH-A	brain
23	chr4:174104600-174110000	Weak transcription	HSMMtube	muscle
24	chr4:174104600-174112600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:174105000-174116400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr4:174105200-174110600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:174105800-174108600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr4:174105800-174109400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr4:174105800-174109800	Enhancers	Fetal Intestine Small	intestine
30	chr4:174106000-174110200	Enhancers	Fetal Intestine Large	intestine
31	chr4:174106600-174114200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr4:174106800-174109000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr4:174106800-174109200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr4:174106800-174112000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr4:174107000-174109200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr4:174107000-174112200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr4:174107000-174117800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr4:174107200-174109000	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr4:174107200-174112000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr4:174107200-174112200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr4:174107400-174112200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr4:174107400-174120800	Weak transcription	Fetal Muscle Leg	muscle
43	chr4:174107600-174109400	Weak transcription	Thymus	Thymus
44	chr4:174107600-174109600	Weak transcription	Fetal Thymus	thymus
45	chr4:174107600-174110400	Enhancers	A549	lung
46	chr4:174107600-174112000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr4:174107600-174112000	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr4:174107600-174112200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr4:174107600-174112600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr4:174107600-174115400	Weak transcription	Primary B cells from cord blood	blood

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