Variant report

Variant	rs11722807
Chromosome Location	chr4:174236753-174236754
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174236553..174238246-chr4:174252256..174255758,3	MCF-7	breast:
2	chr4:174235911..174241843-chr4:174252129..174256843,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164104	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10471199	0.88[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs10520255	0.91[JPT][hapmap]
rs11132982	0.92[ASN][1000 genomes]
rs11721513	1.00[CEU][hapmap]
rs11722602	0.86[EUR][1000 genomes]
rs11724459	1.00[EUR][1000 genomes]
rs11726679	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11728029	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11729778	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11731057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11731262	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11734517	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11736050	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13151627	0.91[JPT][hapmap]
rs1481120	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs17059153	0.86[CHB][hapmap]
rs17059154	0.85[CHB][hapmap]
rs17059272	0.92[YRI][hapmap]
rs34885736	1.00[EUR][1000 genomes]
rs3733476	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3775590	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3775591	0.88[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs4695829	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs56159092	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58185783	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58612091	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61470087	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6821844	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6822924	0.83[JPT][hapmap]
rs6828429	1.00[CEU][hapmap]
rs6833097	0.86[YRI][hapmap]
rs6842693	0.88[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs6853427	0.86[ASN][1000 genomes]
rs72999543	0.87[ASN][1000 genomes]
rs73001510	0.82[ASN][1000 genomes]
rs73001512	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73003342	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003349	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73003362	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003376	0.95[ASN][1000 genomes]
rs73005346	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73005353	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73005356	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73005357	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73005359	0.81[AFR][1000 genomes]
rs73005363	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7664847	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7665469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668435	1.00[CEU][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs7672055	0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs7682997	0.81[AFR][1000 genomes]
rs7686909	0.88[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs7689758	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4610	chr4:174217026-174252627	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174206400-174249400	Weak transcription	Fetal Kidney	kidney
2	chr4:174210400-174253000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr4:174210400-174253000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:174210600-174240200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:174210600-174253000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr4:174210800-174252000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:174213600-174237200	Weak transcription	NHEK	skin
8	chr4:174215000-174239400	Weak transcription	HUVEC	blood vessel
9	chr4:174215200-174239600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:174215200-174249600	Weak transcription	Left Ventricle	heart
11	chr4:174215200-174254000	Weak transcription	Psoas Muscle	Psoas
12	chr4:174217600-174253000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr4:174222400-174246800	Weak transcription	Fetal Lung	lung
14	chr4:174222800-174240200	Weak transcription	NHLF	lung
15	chr4:174222800-174253000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr4:174223200-174239600	Weak transcription	Osteobl	bone
17	chr4:174223200-174240200	Weak transcription	HSMMtube	muscle
18	chr4:174223400-174239600	Weak transcription	NHDF-Ad	bronchial
19	chr4:174223400-174239800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:174223400-174250600	Strong transcription	Dnd41	blood
21	chr4:174223400-174251600	Strong transcription	Fetal Thymus	thymus
22	chr4:174223600-174250400	Weak transcription	Hela-S3	cervix
23	chr4:174224400-174238000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr4:174225000-174239800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr4:174225200-174250800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr4:174226800-174242200	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr4:174227000-174238400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr4:174227000-174239600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:174227000-174239800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr4:174227200-174238800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:174228000-174239000	Strong transcription	Thymus	Thymus
32	chr4:174229000-174249200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr4:174229200-174237400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr4:174229200-174251400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr4:174229200-174252400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:174229200-174253200	Weak transcription	Small Intestine	intestine
37	chr4:174229800-174247600	Weak transcription	NH-A	brain
38	chr4:174230200-174239400	Strong transcription	Primary B cells from cord blood	blood
39	chr4:174230400-174239000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr4:174230800-174239600	Weak transcription	Fetal Heart	heart
41	chr4:174230800-174249200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr4:174231000-174239600	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr4:174231200-174240000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr4:174231200-174254000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr4:174232000-174238400	Strong transcription	Fetal Stomach	stomach
46	chr4:174232000-174239600	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr4:174232200-174238600	Strong transcription	Duodenum Mucosa	Duodenum
48	chr4:174232200-174239600	Weak transcription	Brain Angular Gyrus	brain
49	chr4:174232400-174244000	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr4:174232800-174237400	Strong transcription	Pancreas	Pancrea

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