Variant report

Variant	rs17059154
Chromosome Location	chr4:174044136-174044137
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10520255	0.84[CHB][hapmap]
rs11722807	0.85[CHB][hapmap]
rs13151627	0.84[CHB][hapmap]
rs1481120	0.85[CHB][hapmap]
rs17059153	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3775590	0.84[CHB][hapmap]
rs4314263	0.92[ASN][1000 genomes]
rs6832624	1.00[CEU][hapmap]
rs7665469	0.84[CHB][hapmap]
rs7669036	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7683542	0.96[ASN][1000 genomes]
rs7684996	0.90[EUR][1000 genomes]
rs9991061	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174040600-174044200	Enhancers	NHEK	skin
2	chr4:174040600-174044400	Enhancers	Stomach Mucosa	stomach
3	chr4:174040800-174044600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:174041000-174044200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:174041000-174044200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr4:174041200-174044200	Enhancers	Hela-S3	cervix
7	chr4:174041400-174044600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr4:174041600-174044200	Enhancers	Fetal Thymus	thymus
9	chr4:174041600-174044400	Enhancers	Thymus	Thymus
10	chr4:174042200-174044200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:174042600-174069000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:174043000-174044200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:174043800-174044200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:174044000-174044200	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr4:174044000-174044200	Enhancers	HMEC	breast
16	chr4:174044000-174044600	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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