Variant report

Variant	rs1481120
Chromosome Location	chr4:174242277-174242278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174237784..174242506-chr4:174245786..174248825,4	MCF-7	breast:
2	chr4:174240982..174243911-chr4:174245243..174249082,5	MCF-7	breast:
3	chr4:174238040..174240493-chr4:174240983..174243093,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10471199	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs10520255	0.82[JPT][hapmap]
rs11132982	0.87[ASN][1000 genomes]
rs11721513	1.00[CEU][hapmap]
rs11722807	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs11726679	0.95[ASN][1000 genomes]
rs11728029	0.95[ASN][1000 genomes]
rs11729778	0.98[ASN][1000 genomes]
rs11731057	0.98[ASN][1000 genomes]
rs11731262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11734517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11736050	0.95[ASN][1000 genomes]
rs13151627	0.82[JPT][hapmap]
rs17059153	0.86[CHB][hapmap]
rs17059154	0.85[CHB][hapmap]
rs3733476	0.97[ASN][1000 genomes]
rs3775590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3775591	0.88[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs4695829	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs56159092	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs58185783	0.95[ASN][1000 genomes]
rs58612091	0.97[ASN][1000 genomes]
rs61470087	0.98[ASN][1000 genomes]
rs6821844	0.98[ASN][1000 genomes]
rs6828429	1.00[CEU][hapmap]
rs6842693	0.88[CHB][hapmap];0.89[ASN][1000 genomes]
rs6853427	0.88[ASN][1000 genomes]
rs72999543	0.82[ASN][1000 genomes]
rs73001512	0.85[ASN][1000 genomes]
rs73003342	0.95[ASN][1000 genomes]
rs73003349	0.97[ASN][1000 genomes]
rs73003362	0.95[ASN][1000 genomes]
rs73003376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73005346	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73005353	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73005356	0.98[ASN][1000 genomes]
rs73005357	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73005363	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7664847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7665469	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs7668435	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7672055	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs7686909	0.88[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4610	chr4:174217026-174252627	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174206400-174249400	Weak transcription	Fetal Kidney	kidney
2	chr4:174210400-174253000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr4:174210400-174253000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:174210600-174253000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr4:174210800-174252000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:174215200-174249600	Weak transcription	Left Ventricle	heart
7	chr4:174215200-174254000	Weak transcription	Psoas Muscle	Psoas
8	chr4:174217600-174253000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:174222400-174246800	Weak transcription	Fetal Lung	lung
10	chr4:174222800-174253000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:174223400-174250600	Strong transcription	Dnd41	blood
12	chr4:174223400-174251600	Strong transcription	Fetal Thymus	thymus
13	chr4:174223600-174250400	Weak transcription	Hela-S3	cervix
14	chr4:174225200-174250800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:174229000-174249200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:174229200-174251400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr4:174229200-174252400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:174229200-174253200	Weak transcription	Small Intestine	intestine
19	chr4:174229800-174247600	Weak transcription	NH-A	brain
20	chr4:174230800-174249200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr4:174231200-174254000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:174232400-174244000	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr4:174233600-174249600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:174233800-174246000	Weak transcription	A549	lung
25	chr4:174235200-174244400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr4:174235600-174253000	Weak transcription	Fetal Brain Female	brain
27	chr4:174235600-174253200	Weak transcription	Colonic Mucosa	Colon
28	chr4:174236000-174253800	Weak transcription	Right Ventricle	heart
29	chr4:174236400-174253200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr4:174236600-174249400	Weak transcription	Brain Substantia Nigra	brain
31	chr4:174236600-174250600	Weak transcription	Colon Smooth Muscle	Colon
32	chr4:174237000-174250600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr4:174237200-174242800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr4:174237400-174254200	Weak transcription	Ovary	ovary
35	chr4:174237600-174243400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr4:174237600-174246800	Weak transcription	Spleen	Spleen
37	chr4:174237600-174253200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr4:174237600-174254000	Weak transcription	Esophagus	oesophagus
39	chr4:174237600-174254400	Weak transcription	Pancreas	Pancrea
40	chr4:174237800-174249400	Weak transcription	Stomach Smooth Muscle	stomach
41	chr4:174237800-174253200	Weak transcription	Gastric	stomach
42	chr4:174238200-174249000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr4:174238200-174253200	Weak transcription	Aorta	Aorta
44	chr4:174238400-174246200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr4:174238400-174246800	Weak transcription	Fetal Stomach	stomach
46	chr4:174238400-174253000	Weak transcription	Fetal Intestine Small	intestine
47	chr4:174238400-174254400	Weak transcription	Lung	lung
48	chr4:174239800-174244000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr4:174240000-174243000	Weak transcription	Fetal Intestine Large	intestine
50	chr4:174240000-174249600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links