Variant report

Variant	rs73005363
Chromosome Location	chr4:174259049-174259050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174252933..174259053-chr4:174284716..174299463,25	MCF-7	breast:
2	chr4:174256552..174259513-chr4:174261559..174263260,2	MCF-7	breast:
3	chr4:174254894..174256484-chr4:174257318..174259644,2	MCF-7	breast:
4	chr4:174245727..174260507-chr4:174283013..174295498,65	K562	blood:
5	chr4:174248778..174262653-chr4:174278408..174298501,82	K562	blood:

Variant related genes	Relation type
ENSG00000164105	Chromatin interaction
ENSG00000164104	Chromatin interaction
ENSG00000272870	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11132982	0.87[ASN][1000 genomes]
rs11722602	0.86[EUR][1000 genomes]
rs11722807	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11724459	1.00[EUR][1000 genomes]
rs11726679	0.95[ASN][1000 genomes]
rs11728029	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11729778	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11731057	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11731262	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11734517	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11736050	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1481120	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34885736	1.00[EUR][1000 genomes]
rs3733476	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3775590	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3775591	0.84[ASN][1000 genomes]
rs4695829	0.83[ASN][1000 genomes]
rs56159092	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58185783	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58612091	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61470087	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6821844	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6842693	0.86[ASN][1000 genomes]
rs6853427	0.88[ASN][1000 genomes]
rs72999543	0.85[ASN][1000 genomes]
rs73001510	0.80[ASN][1000 genomes]
rs73001512	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73003342	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73003349	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73003362	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73003376	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73005346	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73005353	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73005356	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73005357	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7664847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7665469	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7668435	0.84[ASN][1000 genomes]
rs7672055	0.87[ASN][1000 genomes]
rs7686909	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966552	chr4:174248506-174259305	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174256800-174280400	Weak transcription	Aorta	Aorta
2	chr4:174257000-174259200	Enhancers	Fetal Heart	heart
3	chr4:174257000-174261800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:174257000-174264400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:174257000-174264400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:174257200-174264400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:174257600-174262000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:174258000-174259200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:174258000-174259200	Enhancers	K562	blood
10	chr4:174258000-174259400	Enhancers	Dnd41	blood
11	chr4:174258000-174261800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:174258000-174262200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:174258000-174264400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr4:174258200-174262200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:174258400-174259200	Enhancers	Osteobl	bone
16	chr4:174258400-174262000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr4:174258600-174259200	Enhancers	Fetal Thymus	thymus
18	chr4:174258600-174259200	Enhancers	Thymus	Thymus
19	chr4:174258600-174259200	Enhancers	GM12878-XiMat	blood
20	chr4:174258600-174259200	Enhancers	HSMM	muscle
21	chr4:174258800-174259200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr4:174258800-174259400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr4:174259000-174259200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr4:174259000-174259200	Weak transcription	NHLF	lung
25	chr4:174259000-174260800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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