Variant report

Variant	rs7668435
Chromosome Location	chr4:174210161-174210162
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr4:174209393-174210880	K562	blood:	n/a	n/a
2	POLR2A	chr4:174209626-174211018	PBDE	blood:	n/a	n/a
3	GATA1	chr4:174209500-174211386	PBDE	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:174207434..174212303-chr4:174214307..174216629,4	K562	blood:
2	chr4:174208171..174211607-chr4:174253885..174256277,4	K562	blood:
3	chr4:173958508..173961349-chr4:174209739..174212375,2	MCF-7	breast:
4	chr4:174209692..174212303-chr4:174214307..174216629,2	K562	blood:
5	chr4:174209019..174210299-chr4:174337781..174338884,5	K562	blood:

No data

Variant related genes	Relation type
GALNT7	TF binding region
ENSG00000164104	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10471199	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10520255	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11132982	0.88[ASN][1000 genomes]
rs11721513	1.00[CEU][hapmap]
rs11722807	1.00[CEU][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs11726679	0.89[ASN][1000 genomes]
rs11728029	0.89[ASN][1000 genomes]
rs11729778	0.86[ASN][1000 genomes]
rs11731057	0.86[ASN][1000 genomes]
rs11731262	1.00[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs11734517	1.00[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs11736050	0.89[ASN][1000 genomes]
rs13151627	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1481120	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3733476	0.84[ASN][1000 genomes]
rs3775590	1.00[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs3775591	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4695829	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs56159092	0.89[ASN][1000 genomes]
rs58185783	0.89[ASN][1000 genomes]
rs58612091	0.91[ASN][1000 genomes]
rs61241252	0.86[ASN][1000 genomes]
rs61470087	0.89[ASN][1000 genomes]
rs6821844	0.86[ASN][1000 genomes]
rs6822924	0.89[CHB][hapmap];0.92[JPT][hapmap]
rs6828429	1.00[CEU][hapmap]
rs6842693	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73001510	0.89[ASN][1000 genomes]
rs73003342	0.89[ASN][1000 genomes]
rs73003349	0.91[ASN][1000 genomes]
rs73003362	0.89[ASN][1000 genomes]
rs73003376	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73005346	0.87[ASN][1000 genomes]
rs73005353	0.87[ASN][1000 genomes]
rs73005356	0.86[ASN][1000 genomes]
rs73005357	0.87[ASN][1000 genomes]
rs73005363	0.84[ASN][1000 genomes]
rs7664847	1.00[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs7665469	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs7672055	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs7686909	1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174201600-174211200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:174203200-174214800	Weak transcription	Pancreas	Pancrea
3	chr4:174206200-174229000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr4:174206400-174249400	Weak transcription	Fetal Kidney	kidney
5	chr4:174207800-174232600	Weak transcription	Ovary	ovary
6	chr4:174208600-174214800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:174208800-174214800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:174208800-174230400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:174209000-174212200	Weak transcription	Primary B cells from cord blood	blood
10	chr4:174209000-174214600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:174209000-174214800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:174209000-174214800	Weak transcription	Aorta	Aorta
13	chr4:174209000-174214800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr4:174209000-174215000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:174209000-174216000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr4:174209000-174216200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr4:174209000-174218600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr4:174209000-174218800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr4:174209000-174220600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:174209000-174223000	Weak transcription	HSMM	muscle
21	chr4:174209000-174223600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr4:174209000-174225200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr4:174209000-174228600	Weak transcription	Esophagus	oesophagus
24	chr4:174209000-174233400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr4:174209000-174235000	Weak transcription	Colonic Mucosa	Colon
26	chr4:174209200-174210600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr4:174209200-174214800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr4:174209200-174216400	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr4:174209200-174217600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr4:174209200-174226800	Weak transcription	Fetal Muscle Trunk	muscle
31	chr4:174209600-174210200	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr4:174209600-174210200	Flanking Active TSS	Thymus	Thymus
33	chr4:174209600-174210200	Enhancers	Dnd41	blood
34	chr4:174209600-174210800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr4:174209600-174210800	Flanking Active TSS	Fetal Thymus	thymus
36	chr4:174209600-174211000	Flanking Active TSS	K562	blood
37	chr4:174209800-174210200	Enhancers	Fetal Intestine Small	intestine
38	chr4:174209800-174210400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr4:174209800-174210400	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr4:174209800-174210400	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr4:174209800-174210400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr4:174209800-174210400	Enhancers	Brain Hippocampus Middle	brain
43	chr4:174209800-174210600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr4:174209800-174210600	Active TSS	Rectal Mucosa Donor 29	rectum
45	chr4:174209800-174217200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr4:174210000-174210200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr4:174210000-174210200	Enhancers	Primary T cells fromperipheralblood	blood
48	chr4:174210000-174210200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
49	chr4:174210000-174210200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr4:174210000-174210200	Active TSS	Duodenum Mucosa	Duodenum

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