Variant report

Variant	rs73003342
Chromosome Location	chr4:174217634-174217635
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10471199	0.81[ASN][1000 genomes]
rs11132982	0.92[ASN][1000 genomes]
rs11722602	0.86[EUR][1000 genomes]
rs11722807	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11724459	1.00[EUR][1000 genomes]
rs11726679	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11728029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11729778	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11731057	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11731262	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11734517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11736050	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481120	0.95[ASN][1000 genomes]
rs34885736	1.00[EUR][1000 genomes]
rs3733476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3775590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3775591	0.89[ASN][1000 genomes]
rs4695829	0.85[ASN][1000 genomes]
rs56159092	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58185783	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58612091	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61470087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6821844	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6842693	0.90[ASN][1000 genomes]
rs6853427	0.86[ASN][1000 genomes]
rs72999543	0.87[ASN][1000 genomes]
rs73001510	0.82[ASN][1000 genomes]
rs73001512	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73003339	0.84[AFR][1000 genomes]
rs73003349	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73003362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003376	0.95[ASN][1000 genomes]
rs73005346	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73005353	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73005356	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73005357	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73005363	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7664847	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7665469	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668435	0.89[ASN][1000 genomes]
rs7672055	0.86[ASN][1000 genomes]
rs7686909	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4610	chr4:174217026-174252627	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174206200-174229000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr4:174206400-174249400	Weak transcription	Fetal Kidney	kidney
3	chr4:174207800-174232600	Weak transcription	Ovary	ovary
4	chr4:174208800-174230400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:174209000-174218600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr4:174209000-174218800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:174209000-174220600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:174209000-174223000	Weak transcription	HSMM	muscle
9	chr4:174209000-174223600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr4:174209000-174225200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr4:174209000-174228600	Weak transcription	Esophagus	oesophagus
12	chr4:174209000-174233400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:174209000-174235000	Weak transcription	Colonic Mucosa	Colon
14	chr4:174209200-174226800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr4:174210200-174219000	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr4:174210200-174221200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr4:174210400-174226600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr4:174210400-174235400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:174210400-174253000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr4:174210400-174253000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr4:174210600-174228600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr4:174210600-174235200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr4:174210600-174235200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr4:174210600-174240200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr4:174210600-174253000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr4:174210800-174218600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr4:174210800-174223000	Weak transcription	Brain Anterior Caudate	brain
28	chr4:174210800-174228400	Weak transcription	Small Intestine	intestine
29	chr4:174210800-174236200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr4:174210800-174252000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr4:174211000-174217800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr4:174211200-174225000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr4:174212200-174228000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr4:174212200-174228200	Weak transcription	Fetal Intestine Small	intestine
35	chr4:174212400-174228200	Weak transcription	Fetal Stomach	stomach
36	chr4:174213000-174220600	Strong transcription	Fetal Thymus	thymus
37	chr4:174213000-174222600	Weak transcription	A549	lung
38	chr4:174213600-174237200	Weak transcription	NHEK	skin
39	chr4:174213800-174235400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr4:174214600-174220200	Strong transcription	Primary hematopoietic stem cells	blood
41	chr4:174214800-174219200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr4:174214800-174219800	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr4:174214800-174220600	Strong transcription	Dnd41	blood
44	chr4:174214800-174220600	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr4:174214800-174235600	Weak transcription	Adipose Nuclei	Adipose
46	chr4:174215000-174228600	Weak transcription	Spleen	Spleen
47	chr4:174215000-174239400	Weak transcription	HUVEC	blood vessel
48	chr4:174215200-174225600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr4:174215200-174228000	Weak transcription	Fetal Muscle Leg	muscle
50	chr4:174215200-174228400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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