Variant report

Variant	rs34885736
Chromosome Location	chr4:174239704-174239705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:174239581..174240566-chr4:174337796..174338841,9	K562	blood:
2	chr4:174239481..174240727-chr4:174337437..174338742,6	MCF-7	breast:
3	chr4:174239461..174240574-chr4:174414785..174416197,3	K562	blood:
4	chr4:174237784..174242506-chr4:174245786..174248825,4	MCF-7	breast:
5	chr4:174225337..174228056-chr4:174239161..174240941,2	K562	blood:
6	chr4:174239631..174240582-chr4:174341121..174341795,2	K562	blood:
7	chr4:174239681..174240332-chr4:174337877..174338420,2	MCF-7	breast:
8	chr4:174226655..174230788-chr4:174237584..174240608,3	K562	blood:
9	chr4:174235911..174241843-chr4:174252129..174256843,8	MCF-7	breast:
10	chr4:174238040..174240493-chr4:174240983..174243093,2	K562	blood:
11	chr4:174234558..174237246-chr4:174239051..174241442,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000109586	Chromatin interaction
ENSG00000164104	Chromatin interaction
ENSG00000242882	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11722602	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11722807	1.00[EUR][1000 genomes]
rs11724459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728029	1.00[EUR][1000 genomes]
rs11729778	1.00[EUR][1000 genomes]
rs11731057	1.00[EUR][1000 genomes]
rs11731262	1.00[EUR][1000 genomes]
rs11734517	1.00[EUR][1000 genomes]
rs11736050	1.00[EUR][1000 genomes]
rs3733476	1.00[EUR][1000 genomes]
rs3775590	1.00[EUR][1000 genomes]
rs56159092	1.00[EUR][1000 genomes]
rs58185783	1.00[EUR][1000 genomes]
rs58612091	1.00[EUR][1000 genomes]
rs61470087	1.00[EUR][1000 genomes]
rs6821844	1.00[EUR][1000 genomes]
rs73001512	0.86[EUR][1000 genomes]
rs73003342	1.00[EUR][1000 genomes]
rs73003349	1.00[EUR][1000 genomes]
rs73003362	1.00[EUR][1000 genomes]
rs73005346	1.00[EUR][1000 genomes]
rs73005353	1.00[EUR][1000 genomes]
rs73005356	1.00[EUR][1000 genomes]
rs73005357	1.00[EUR][1000 genomes]
rs73005363	1.00[EUR][1000 genomes]
rs7664847	1.00[EUR][1000 genomes]
rs7665469	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4610	chr4:174217026-174252627	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174206400-174249400	Weak transcription	Fetal Kidney	kidney
2	chr4:174210400-174253000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr4:174210400-174253000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:174210600-174240200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:174210600-174253000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr4:174210800-174252000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:174215200-174249600	Weak transcription	Left Ventricle	heart
8	chr4:174215200-174254000	Weak transcription	Psoas Muscle	Psoas
9	chr4:174217600-174253000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:174222400-174246800	Weak transcription	Fetal Lung	lung
11	chr4:174222800-174240200	Weak transcription	NHLF	lung
12	chr4:174222800-174253000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr4:174223200-174240200	Weak transcription	HSMMtube	muscle
14	chr4:174223400-174239800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:174223400-174250600	Strong transcription	Dnd41	blood
16	chr4:174223400-174251600	Strong transcription	Fetal Thymus	thymus
17	chr4:174223600-174250400	Weak transcription	Hela-S3	cervix
18	chr4:174225000-174239800	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr4:174225200-174250800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr4:174226800-174242200	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr4:174227000-174239800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr4:174229000-174249200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:174229200-174251400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr4:174229200-174252400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:174229200-174253200	Weak transcription	Small Intestine	intestine
26	chr4:174229800-174247600	Weak transcription	NH-A	brain
27	chr4:174230800-174249200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr4:174231200-174240000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:174231200-174254000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr4:174232400-174244000	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr4:174233600-174249600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr4:174233800-174246000	Weak transcription	A549	lung
33	chr4:174235200-174240000	Strong transcription	Primary hematopoietic stem cells	blood
34	chr4:174235200-174240000	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr4:174235200-174240400	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr4:174235200-174244400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr4:174235600-174240000	Strong transcription	Fetal Intestine Large	intestine
38	chr4:174235600-174253000	Weak transcription	Fetal Brain Female	brain
39	chr4:174235600-174253200	Weak transcription	Colonic Mucosa	Colon
40	chr4:174236000-174240200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr4:174236000-174253800	Weak transcription	Right Ventricle	heart
42	chr4:174236400-174253200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr4:174236600-174239800	Weak transcription	HSMM	muscle
44	chr4:174236600-174239800	Weak transcription	K562	blood
45	chr4:174236600-174249400	Weak transcription	Brain Substantia Nigra	brain
46	chr4:174236600-174250600	Weak transcription	Colon Smooth Muscle	Colon
47	chr4:174237000-174240200	Weak transcription	Stomach Mucosa	stomach
48	chr4:174237000-174250600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr4:174237200-174241200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr4:174237200-174242000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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