Variant report

Variant	rs7665469
Chromosome Location	chr4:174229762-174229763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174229058..174231834-chr4:174254792..174257398,2	MCF-7	breast:
2	chr4:174228695..174231199-chr4:174232859..174234793,2	K562	blood:
3	chr4:174228022..174232721-chr4:174253766..174256479,5	K562	blood:
4	chr17:57913457..57915668-chr4:174228820..174230620,2	MCF-7	breast:
5	chr4:174226655..174230788-chr4:174237584..174240608,3	K562	blood:

Variant related genes	Relation type
ENSG00000062716	Chromatin interaction
ENSG00000164104	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10471199	0.88[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs10520255	0.92[JPT][hapmap]
rs11132982	0.92[ASN][1000 genomes]
rs11721513	1.00[CEU][hapmap]
rs11722602	0.86[EUR][1000 genomes]
rs11722807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11724459	1.00[EUR][1000 genomes]
rs11726679	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11728029	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11729778	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11731057	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11731262	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11734517	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11736050	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13151627	0.92[JPT][hapmap]
rs1481120	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs17059153	0.86[CHB][hapmap]
rs17059154	0.84[CHB][hapmap]
rs17059272	1.00[MEX][hapmap];0.92[YRI][hapmap]
rs34885736	1.00[EUR][1000 genomes]
rs3733476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3775590	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3775591	0.88[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs4695829	0.88[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs56159092	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58185783	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58612091	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61470087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6821844	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6822924	0.92[JPT][hapmap]
rs6828429	1.00[CEU][hapmap]
rs6833097	0.86[YRI][hapmap]
rs6842693	0.88[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs6853427	0.86[ASN][1000 genomes]
rs72999543	0.87[ASN][1000 genomes]
rs73001510	0.82[ASN][1000 genomes]
rs73001512	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73003342	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003349	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73003362	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003376	0.95[ASN][1000 genomes]
rs73005346	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73005353	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73005356	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73005357	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73005363	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7664847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7668435	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs7672055	0.88[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs7686909	0.88[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4610	chr4:174217026-174252627	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174206400-174249400	Weak transcription	Fetal Kidney	kidney
2	chr4:174207800-174232600	Weak transcription	Ovary	ovary
3	chr4:174208800-174230400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:174209000-174233400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:174209000-174235000	Weak transcription	Colonic Mucosa	Colon
6	chr4:174210400-174235400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:174210400-174253000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr4:174210400-174253000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr4:174210600-174235200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr4:174210600-174235200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:174210600-174240200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr4:174210600-174253000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr4:174210800-174236200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:174210800-174252000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:174213600-174237200	Weak transcription	NHEK	skin
16	chr4:174213800-174235400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr4:174214800-174235600	Weak transcription	Adipose Nuclei	Adipose
18	chr4:174215000-174239400	Weak transcription	HUVEC	blood vessel
19	chr4:174215200-174232800	Weak transcription	Pancreas	Pancrea
20	chr4:174215200-174233400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:174215200-174235200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:174215200-174236000	Weak transcription	Aorta	Aorta
23	chr4:174215200-174239600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr4:174215200-174249600	Weak transcription	Left Ventricle	heart
25	chr4:174215200-174254000	Weak transcription	Psoas Muscle	Psoas
26	chr4:174217200-174236000	Weak transcription	Stomach Mucosa	stomach
27	chr4:174217600-174253000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr4:174219000-174235200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr4:174220600-174236200	Weak transcription	Brain Substantia Nigra	brain
30	chr4:174222200-174235400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr4:174222400-174246800	Weak transcription	Fetal Lung	lung
32	chr4:174222800-174240200	Weak transcription	NHLF	lung
33	chr4:174222800-174253000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr4:174223200-174239600	Weak transcription	Osteobl	bone
35	chr4:174223200-174240200	Weak transcription	HSMMtube	muscle
36	chr4:174223400-174235400	Weak transcription	Brain Anterior Caudate	brain
37	chr4:174223400-174239600	Weak transcription	NHDF-Ad	bronchial
38	chr4:174223400-174239800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr4:174223400-174250600	Strong transcription	Dnd41	blood
40	chr4:174223400-174251600	Strong transcription	Fetal Thymus	thymus
41	chr4:174223600-174250400	Weak transcription	Hela-S3	cervix
42	chr4:174224000-174235200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr4:174224000-174235400	Weak transcription	Colon Smooth Muscle	Colon
44	chr4:174224400-174232000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr4:174224400-174238000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr4:174225000-174231800	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr4:174225000-174239800	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr4:174225200-174233000	Strong transcription	Primary T cells from cord blood	blood
49	chr4:174225200-174250800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr4:174225800-174233800	Strong transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links