Variant report

Variant	rs7672055
Chromosome Location	chr4:174260831-174260832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr4:174260790-174260873	HepG2	liver:	n/a	chr4:174260833-174260853

No.	Distal block	Cell Line	Cell type
1	chr4:174259306..174263200-chr4:174289904..174292962,3	MCF-7	breast:
2	chr4:174255359..174258412-chr4:174259763..174262859,4	MCF-7	breast:
3	chr4:174260144..174264578-chr4:174266432..174269762,4	K562	blood:
4	chr4:174248778..174262653-chr4:174278408..174298501,82	K562	blood:

Variant related genes	Relation type
HMGB2	TF binding region
ENSG00000164104	Chromatin interaction
ENSG00000272870	Chromatin interaction
ENSG00000164105	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10471199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10520255	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs11132982	0.84[ASN][1000 genomes]
rs11722807	0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs11726679	0.86[ASN][1000 genomes]
rs11728029	0.86[ASN][1000 genomes]
rs11729778	0.86[ASN][1000 genomes]
rs11731057	0.86[ASN][1000 genomes]
rs11731262	0.88[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs11734517	0.88[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs11736050	0.86[ASN][1000 genomes]
rs13151627	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs1481120	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs3733476	0.87[ASN][1000 genomes]
rs3775590	0.88[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs3775591	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4695829	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56159092	0.86[ASN][1000 genomes]
rs58185783	0.86[ASN][1000 genomes]
rs58612091	0.84[ASN][1000 genomes]
rs61241252	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61470087	0.86[ASN][1000 genomes]
rs6821844	0.86[ASN][1000 genomes]
rs6822924	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs6842693	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73001510	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73003342	0.86[ASN][1000 genomes]
rs73003349	0.84[ASN][1000 genomes]
rs73003362	0.86[ASN][1000 genomes]
rs73003376	0.84[ASN][1000 genomes]
rs73005346	0.84[ASN][1000 genomes]
rs73005353	0.84[ASN][1000 genomes]
rs73005356	0.86[ASN][1000 genomes]
rs73005357	0.84[ASN][1000 genomes]
rs73005363	0.87[ASN][1000 genomes]
rs7664847	0.88[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs7665469	0.88[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs7668435	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs7686909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174256800-174280400	Weak transcription	Aorta	Aorta
2	chr4:174257000-174261800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:174257000-174264400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:174257000-174264400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:174257200-174264400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:174257600-174262000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:174258000-174261800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:174258000-174262200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:174258000-174264400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:174258200-174262200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:174258400-174262000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:174259200-174264400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr4:174259200-174266400	Weak transcription	HSMM	muscle
14	chr4:174259200-174290400	Weak transcription	Thymus	Thymus
15	chr4:174260800-174261000	Enhancers	Dnd41	blood

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