Variant report

Variant	rs10471199
Chromosome Location	chr4:174186322-174186323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr4:174185705-174186390	HEK293	kidney:	n/a	n/a
2	TCF12	chr4:174185604-174186452	SK-N-SH	brain:	n/a	n/a
3	YY1	chr4:174186126-174186462	SK-N-SH_RA	brain:	n/a	n/a
4	TCF12	chr4:174185665-174186425	SK-N-SH	brain:	n/a	n/a
5	PBX3	chr4:174185799-174186346	SK-N-SH	brain:	n/a	n/a
6	NFIC	chr4:174185737-174186380	SK-N-SH	brain:	n/a	n/a
7	POLR2A	chr4:174185857-174186323	HL-60	blood:	n/a	n/a
8	GATA1	chr4:174185236-174186422	PBDE	blood:	n/a	n/a
9	TBL1XR1	chr4:174185830-174186361	K562	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:174184488..174187723-chr4:174190497..174194400,3	K562	blood:
2	chr4:174186029..174188126-chr4:174188833..174191711,2	K562	blood:
3	chr4:174137352..174140088-chr4:174184722..174187553,2	K562	blood:

No data

Variant related genes	Relation type
MIR548T	TF binding region
ENSG00000221296	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10520255	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11722807	0.88[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs11726679	0.81[ASN][1000 genomes]
rs11728029	0.81[ASN][1000 genomes]
rs11731262	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs11734517	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs11736050	0.81[ASN][1000 genomes]
rs13151627	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1481120	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs3775590	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs3775591	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4695829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58185783	0.81[ASN][1000 genomes]
rs61241252	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6822924	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6842693	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72999543	0.90[ASN][1000 genomes]
rs73001510	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73001512	0.90[ASN][1000 genomes]
rs73003342	0.81[ASN][1000 genomes]
rs73003362	0.81[ASN][1000 genomes]
rs7664847	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs7665469	0.88[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs7668435	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7672055	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7686909	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174159200-174204600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:174159600-174189000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:174171400-174202600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr4:174173600-174190400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:174173600-174202200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr4:174174600-174195800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr4:174177600-174197800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:174179000-174191600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:174183200-174186600	Enhancers	Primary B cells from peripheral blood	blood
10	chr4:174184600-174186600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr4:174184600-174186600	Flanking Active TSS	Dnd41	blood
12	chr4:174184600-174186800	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr4:174184800-174186400	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr4:174184800-174186600	Enhancers	Duodenum Mucosa	Duodenum
15	chr4:174184800-174186800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr4:174185000-174186400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr4:174185000-174186400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr4:174185000-174186400	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr4:174185000-174186600	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr4:174185200-174186400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr4:174185200-174186600	Enhancers	Fetal Lung	lung
22	chr4:174185400-174186400	Enhancers	H1 Cell Line	embryonic stem cell
23	chr4:174185400-174186400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:174185400-174186400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr4:174185400-174186400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr4:174185400-174186400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr4:174185400-174186400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:174185400-174186400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:174185400-174186400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:174185400-174186400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr4:174185400-174186400	Enhancers	Brain Anterior Caudate	brain
32	chr4:174185400-174186400	Enhancers	Fetal Intestine Large	intestine
33	chr4:174185400-174186400	Enhancers	Fetal Intestine Small	intestine
34	chr4:174185400-174186400	Enhancers	HMEC	breast
35	chr4:174185400-174186400	Flanking Active TSS	HSMM	muscle
36	chr4:174185400-174186600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr4:174185400-174186600	Enhancers	Brain Angular Gyrus	brain
38	chr4:174185400-174186600	Enhancers	Colon Smooth Muscle	Colon
39	chr4:174185400-174186600	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr4:174185400-174186600	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr4:174185400-174186600	Enhancers	Stomach Mucosa	stomach
42	chr4:174185400-174186600	Enhancers	HUVEC	blood vessel
43	chr4:174185400-174186600	Enhancers	NHDF-Ad	bronchial
44	chr4:174185400-174186600	Enhancers	NHLF	lung
45	chr4:174185600-174186400	Enhancers	Primary T cells fromperipheralblood	blood
46	chr4:174185600-174186400	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr4:174185600-174186400	Flanking Active TSS	Fetal Thymus	thymus
48	chr4:174185600-174186400	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr4:174185600-174186600	Enhancers	Fetal Kidney	kidney
50	chr4:174185600-174186600	Enhancers	Psoas Muscle	Psoas

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