Variant report

Variant	rs4695829
Chromosome Location	chr4:174194098-174194099
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:174184488..174187723-chr4:174190497..174194400,3	K562	blood:
2	chr4:174192014..174194666-chr4:174199386..174201748,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10471199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10520255	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs11132982	0.83[ASN][1000 genomes]
rs11722807	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs11726679	0.85[ASN][1000 genomes]
rs11728029	0.85[ASN][1000 genomes]
rs11729778	0.82[ASN][1000 genomes]
rs11731057	0.82[ASN][1000 genomes]
rs11731262	0.88[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs11734517	0.88[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs11736050	0.85[ASN][1000 genomes]
rs13151627	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1481120	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs3733476	0.83[ASN][1000 genomes]
rs3775590	0.88[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs3775591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56159092	0.82[ASN][1000 genomes]
rs58185783	0.85[ASN][1000 genomes]
rs58612091	0.83[ASN][1000 genomes]
rs61241252	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61470087	0.82[ASN][1000 genomes]
rs6821844	0.82[ASN][1000 genomes]
rs6822924	0.89[CHB][hapmap];0.92[JPT][hapmap]
rs6842693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72999543	0.85[ASN][1000 genomes]
rs73001510	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73001512	0.88[ASN][1000 genomes]
rs73003342	0.85[ASN][1000 genomes]
rs73003349	0.83[ASN][1000 genomes]
rs73003362	0.85[ASN][1000 genomes]
rs73003376	0.80[ASN][1000 genomes]
rs73005346	0.80[ASN][1000 genomes]
rs73005353	0.80[ASN][1000 genomes]
rs73005356	0.82[ASN][1000 genomes]
rs73005357	0.80[ASN][1000 genomes]
rs73005363	0.83[ASN][1000 genomes]
rs7664847	0.88[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs7665469	0.88[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs7668435	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7672055	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7686909	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174159200-174204600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:174171400-174202600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr4:174173600-174202200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr4:174174600-174195800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:174177600-174197800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:174186200-174194200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:174186200-174196000	Weak transcription	GM12878-XiMat	blood
8	chr4:174186400-174194800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr4:174186400-174196000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:174186400-174196000	Weak transcription	Aorta	Aorta
11	chr4:174186400-174196000	Weak transcription	Fetal Intestine Large	intestine
12	chr4:174186400-174196000	Weak transcription	Gastric	stomach
13	chr4:174186400-174196000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr4:174186400-174198600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr4:174186400-174208600	Weak transcription	Esophagus	oesophagus
16	chr4:174186600-174194200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr4:174186600-174194200	Weak transcription	Stomach Mucosa	stomach
18	chr4:174186600-174196000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr4:174186600-174206800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr4:174186600-174207000	Weak transcription	Ovary	ovary
21	chr4:174186600-174207000	Weak transcription	Small Intestine	intestine
22	chr4:174186600-174209800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr4:174186800-174194400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr4:174186800-174203600	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr4:174187200-174194600	Weak transcription	K562	blood
26	chr4:174187400-174202400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr4:174188800-174194600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:174188800-174195800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr4:174189400-174196000	Weak transcription	Primary T cells from cord blood	blood
30	chr4:174189600-174194600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr4:174190600-174195200	Enhancers	Fetal Lung	lung
32	chr4:174190800-174196000	Weak transcription	Fetal Muscle Leg	muscle
33	chr4:174191800-174204600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr4:174191800-174205000	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr4:174192000-174196000	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr4:174192200-174196000	Weak transcription	Thymus	Thymus
37	chr4:174192200-174198800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr4:174192200-174205000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr4:174192800-174199600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr4:174193200-174200400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr4:174193400-174195200	Enhancers	NHLF	lung
42	chr4:174193400-174195600	Enhancers	NHDF-Ad	bronchial
43	chr4:174193400-174196800	Strong transcription	Dnd41	blood
44	chr4:174193600-174194400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr4:174193800-174195000	Strong transcription	Primary B cells from cord blood	blood
46	chr4:174194000-174194400	Weak transcription	Fetal Stomach	stomach
47	chr4:174194000-174194800	Enhancers	Muscle Satellite Cultured Cells	--
48	chr4:174194000-174195200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr4:174194000-174196000	Strong transcription	Fetal Thymus	thymus

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