Variant report

Variant	rs7683542
Chromosome Location	chr4:174024254-174024255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17059153	0.96[ASN][1000 genomes]
rs17059154	0.96[ASN][1000 genomes]
rs17059159	0.96[ASN][1000 genomes]
rs4314263	0.96[ASN][1000 genomes]
rs7669036	0.98[ASN][1000 genomes]
rs9991061	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174016200-174027800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:174021800-174027400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:174024200-174024400	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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