Variant report

Variant	rs769113
Chromosome Location	chr7:53742365-53742366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12532550	0.91[EUR][1000 genomes]
rs17135915	0.91[EUR][1000 genomes]
rs17135971	0.93[ASN][1000 genomes]
rs2193600	0.93[ASN][1000 genomes]
rs2216395	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61189319	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73371972	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73373819	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73383366	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7778146	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948546	chr7:53538304-54337148	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1032785	chr7:53660651-53758673	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2754296	chr7:53731621-53776553	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:53741600-53742600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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