Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1155894	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12055937	0.89[ASN][1000 genomes]
rs17135915	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1806416	0.89[ASN][1000 genomes]
rs2113759	0.89[ASN][1000 genomes]
rs2216395	0.91[EUR][1000 genomes]
rs4947822	0.89[ASN][1000 genomes]
rs61189319	0.91[EUR][1000 genomes]
rs6593090	0.89[ASN][1000 genomes]
rs6593091	0.89[ASN][1000 genomes]
rs6949374	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6951379	0.89[ASN][1000 genomes]
rs6960686	0.89[ASN][1000 genomes]
rs6962091	0.89[ASN][1000 genomes]
rs6976896	0.89[ASN][1000 genomes]
rs6977917	0.89[ASN][1000 genomes]
rs6978095	0.89[ASN][1000 genomes]
rs6980129	0.89[ASN][1000 genomes]
rs73371972	1.00[EUR][1000 genomes]
rs73373819	0.91[EUR][1000 genomes]
rs73383366	0.91[EUR][1000 genomes]
rs769113	0.91[EUR][1000 genomes]
rs7801263	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948546	chr7:53538304-54337148	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1032785	chr7:53660651-53758673	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:53709400-53710400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:53709400-53710600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:53709400-53711400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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