Variant report

Variant	rs6960686
Chromosome Location	chr7:53665470-53665471
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1155894	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12055937	1.00[ASN][1000 genomes]
rs12532550	0.89[ASN][1000 genomes]
rs17135915	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1806416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2113759	1.00[ASN][1000 genomes]
rs4947822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593090	1.00[ASN][1000 genomes]
rs6593091	1.00[ASN][1000 genomes]
rs6949374	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6951379	1.00[ASN][1000 genomes]
rs6962091	1.00[ASN][1000 genomes]
rs6976896	1.00[ASN][1000 genomes]
rs6977917	1.00[ASN][1000 genomes]
rs6978095	1.00[ASN][1000 genomes]
rs6980129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7801263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948546	chr7:53538304-54337148	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1032785	chr7:53660651-53758673	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:53655600-53671400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:53663400-53666800	Enhancers	Rectal Smooth Muscle	rectum
3	chr7:53663800-53670400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:53664200-53670400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:53664600-53667800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr7:53664600-53670400	Weak transcription	HMEC	breast
7	chr7:53665200-53666200	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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