Variant report

Variant	rs6949374
Chromosome Location	chr7:53679232-53679233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1155894	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12055937	1.00[ASN][1000 genomes]
rs12532550	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17135915	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1806416	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2113759	1.00[ASN][1000 genomes]
rs4947822	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6593090	1.00[ASN][1000 genomes]
rs6593091	1.00[ASN][1000 genomes]
rs6951379	1.00[ASN][1000 genomes]
rs6960686	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6962091	1.00[ASN][1000 genomes]
rs6976896	1.00[ASN][1000 genomes]
rs6977917	1.00[ASN][1000 genomes]
rs6978095	1.00[ASN][1000 genomes]
rs6980129	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73371972	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7801263	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948546	chr7:53538304-54337148	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1032785	chr7:53660651-53758673	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:53677800-53679600	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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