Variant report

Variant	rs76926780
Chromosome Location	chr9:72653496-72653497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72650886..72653009-chr9:72653069..72655464,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3344470	chr9:72653034-72653572	Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3438997	chr9:72653223-72657079	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72647400-72657200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:72651600-72654000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:72652800-72653600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:72652800-72653600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:72653000-72653600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
6	chr9:72653000-72653600	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
7	chr9:72653000-72653600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
8	chr9:72653000-72653600	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:72653000-72653600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:72653000-72653600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:72653000-72653600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
12	chr9:72653000-72653600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:72653000-72653600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:72653000-72653600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
15	chr9:72653000-72653600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
16	chr9:72653000-72653600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
17	chr9:72653000-72653600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
18	chr9:72653000-72653600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
19	chr9:72653000-72653600	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr9:72653000-72653600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr9:72653000-72653600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:72653000-72653600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:72653000-72653600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:72653000-72653600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
25	chr9:72653000-72653600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr9:72653000-72653600	ZNF genes & repeats	Primary B cells from cord blood	blood
27	chr9:72653000-72653600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
28	chr9:72653000-72653600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
29	chr9:72653000-72653600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
30	chr9:72653000-72653600	Flanking Bivalent TSS/Enh	Primary T helper naive cells from peripheral blood	blood
31	chr9:72653000-72653600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
32	chr9:72653000-72653600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
33	chr9:72653000-72653600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
34	chr9:72653000-72653600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
35	chr9:72653000-72653600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
36	chr9:72653000-72653600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
37	chr9:72653000-72653600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr9:72653000-72653600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
39	chr9:72653000-72653600	Flanking Bivalent TSS/Enh	Primary T killer naive cells fromperipheralblood	blood
40	chr9:72653000-72653600	Flanking Bivalent TSS/Enh	Primary T killer memory cells from peripheral blood	blood
41	chr9:72653000-72653600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr9:72653000-72653600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr9:72653000-72653600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr9:72653000-72653600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
45	chr9:72653000-72653600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
46	chr9:72653000-72653600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr9:72653000-72653600	ZNF genes & repeats	Adipose Nuclei	Adipose
48	chr9:72653000-72653600	ZNF genes & repeats	Liver	Liver
49	chr9:72653000-72653600	Flanking Bivalent TSS/Enh	Brain Angular Gyrus	brain
50	chr9:72653000-72653600	ZNF genes & repeats	Brain Anterior Caudate	brain

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