Variant report

Variant	rs7692976
Chromosome Location	chr4:110911567-110911568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXM1	chr4:110911498-110912527	GM12878	blood:	n/a	n/a
2	EP300	chr4:110911492-110912405	GM12878	blood:	n/a	n/a
3	ATF2	chr4:110911553-110912468	GM12878	blood:	n/a	n/a
4	STAT5A	chr4:110911484-110912347	GM12878	blood:	n/a	chr4:110912218-110912229 chr4:110911553-110911561 chr4:110911713-110911724
5	BHLHE40	chr4:110911328-110912385	GM12878	blood:	n/a	n/a
6	RUNX3	chr4:110911254-110912474	GM12878	blood:	n/a	chr4:110911492-110911501 chr4:110911492-110911501
7	SPI1	chr4:110911333-110912760	GM12878	blood:	n/a	chr4:110912713-110912720
8	RELA	chr4:110911487-110912656	GM12878	blood:	n/a	n/a
9	RCOR1	chr4:110911305-110912640	GM12878	blood:	n/a	n/a
10	SPI1	chr4:110911415-110911721	HL-60	blood:	n/a	n/a
11	PAX5	chr4:110911541-110912342	GM12878	blood:	n/a	chr4:110911555-110911564 chr4:110912220-110912229
12	IKZF1	chr4:110911475-110912684	GM12878	blood:	n/a	n/a
13	USF2	chr4:110911489-110912146	GM12878	blood:	n/a	n/a
14	USF1	chr4:110911551-110911815	K562	blood:	n/a	n/a
15	NFIC	chr4:110911344-110912623	GM12878	blood:	n/a	n/a
16	SPI1	chr4:110911394-110912379	GM12891	blood:	n/a	n/a
17	RUNX3	chr4:110911318-110912404	GM12878	blood:	n/a	chr4:110911492-110911501 chr4:110911492-110911501
18	ATF2	chr4:110911385-110912458	GM12878	blood:	n/a	n/a
19	STAT3	chr4:110911555-110912329	GM12878	blood:	n/a	chr4:110912218-110912229 chr4:110911713-110911724
20	IRF4	chr4:110911536-110912374	GM12878	blood:	n/a	n/a
21	BCLAF1	chr4:110911543-110912327	GM12878	blood:	n/a	chr4:110912220-110912229 chr4:110911729-110911736

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110910332..110912900-chr4:111091767..111093737,2	K562	blood:
2	chr4:110905512..110907567-chr4:110910504..110912580,2	K562	blood:

Variant related genes	Relation type
RNU6-35P	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10021804	0.82[AMR][1000 genomes]
rs11098057	0.82[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1860129	0.84[AMR][1000 genomes]
rs2074390	0.82[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2190907	0.83[AMR][1000 genomes]
rs2237049	0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2237051	0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2237052	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2237053	1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2282784	0.81[AMR][1000 genomes]
rs2298983	0.81[AMR][1000 genomes]
rs2298989	0.83[YRI][hapmap];0.91[AMR][1000 genomes]
rs2298991	0.82[YRI][hapmap];0.88[AMR][1000 genomes]
rs2298992	0.92[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2298993	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2298999	0.82[JPT][hapmap]
rs28471982	0.81[AMR][1000 genomes]
rs3796944	0.81[AMR][1000 genomes]
rs3796948	0.81[AMR][1000 genomes]
rs6533482	0.81[AMR][1000 genomes]
rs6533483	0.85[AMR][1000 genomes]
rs6533485	0.81[AMR][1000 genomes]
rs6824594	0.82[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs882405	0.81[AMR][1000 genomes]
rs882471	0.82[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs929446	0.83[AMR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110895000-110928600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:110901000-110929600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:110901400-110920800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:110906800-110920800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:110907000-110932400	Weak transcription	Psoas Muscle	Psoas
6	chr4:110907800-110927400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:110908600-110916200	Strong transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:110909600-110912000	Enhancers	HMEC	breast
9	chr4:110909600-110913800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr4:110909800-110911600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:110910200-110911600	Weak transcription	Esophagus	oesophagus
12	chr4:110910200-110920400	Weak transcription	Fetal Intestine Small	intestine
13	chr4:110910400-110935200	Weak transcription	Pancreas	Pancrea
14	chr4:110910600-110929800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:110910800-110926800	Weak transcription	Fetal Heart	heart
16	chr4:110911000-110911800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:110911000-110912000	Enhancers	NHEK	skin
18	chr4:110911200-110912200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:110911200-110912800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr4:110911200-110913400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
21	chr4:110911400-110912200	Flanking Active TSS	GM12878-XiMat	blood

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