Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10857004	0.82[CHB][hapmap]
rs11098057	0.84[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes]
rs11569104	0.82[CHB][hapmap]
rs2074390	0.84[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes]
rs2074392	0.82[CHB][hapmap]
rs2237049	0.84[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes]
rs2237051	0.84[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes]
rs2237052	0.83[CEU][hapmap];0.88[CHB][hapmap];0.82[AMR][1000 genomes]
rs2237053	0.85[CEU][hapmap];0.88[CHB][hapmap];0.82[AMR][1000 genomes]
rs2298989	0.87[MEX][hapmap]
rs2298999	1.00[ASW][hapmap];0.81[CEU][hapmap];0.83[MEX][hapmap]
rs28471982	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28588746	0.97[EUR][1000 genomes]
rs28852688	0.97[EUR][1000 genomes]
rs3733626	0.82[CHB][hapmap]
rs3796944	0.82[MEX][hapmap]
rs6533485	0.81[CHB][hapmap]
rs6824594	0.84[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes]
rs7692976	0.85[CHB][hapmap];0.82[AMR][1000 genomes]
rs882471	0.84[CEU][hapmap];0.88[JPT][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs971695	0.82[CHB][hapmap]
rs971696	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763384	chr4:110939666-110942596	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10021804	GAR1	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110941000-110942600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr4:110941200-110942600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:110941600-110942800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr4:110941600-110943000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:110941800-110943000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:110941800-110945400	Weak transcription	Brain Germinal Matrix	brain
7	chr4:110941800-110946200	Weak transcription	Fetal Lung	lung
8	chr4:110942400-110942600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr4:110942400-110942600	Enhancers	H9 Cell Line	embryonic stem cell

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