Variant report

Variant	rs2074392
Chromosome Location	chr4:110928949-110928950
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110928145..110929651-chr4:111119068..111121092,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170522	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10010695	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1005903	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11098060	0.88[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11098061	0.86[EUR][1000 genomes]
rs11569019	1.00[CEU][hapmap]
rs11569020	1.00[CEU][hapmap]
rs11569104	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11569121	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs17041230	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237053	0.84[CHB][hapmap]
rs2237054	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs2282787	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2298996	1.00[CEU][hapmap]
rs3733626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56339535	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56725761	0.84[EUR][1000 genomes]
rs6825106	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes]
rs7653900	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662362	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670908	1.00[CEU][hapmap]
rs971695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9991367	1.00[CEU][hapmap]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110901000-110929600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:110907000-110932400	Weak transcription	Psoas Muscle	Psoas
3	chr4:110910400-110935200	Weak transcription	Pancreas	Pancrea
4	chr4:110910600-110929800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:110919000-110935200	Weak transcription	Left Ventricle	heart
6	chr4:110920800-110935800	Strong transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:110926800-110930000	Enhancers	HepG2	liver
8	chr4:110926800-110930400	Enhancers	Fetal Heart	heart
9	chr4:110926800-110931200	Enhancers	Liver	Liver
10	chr4:110927400-110931000	Strong transcription	Skeletal Muscle Male	skeletal muscle
11	chr4:110927600-110930000	Enhancers	Fetal Intestine Small	intestine
12	chr4:110928000-110930000	Enhancers	Fetal Kidney	kidney
13	chr4:110928400-110931400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:110928400-110931400	Enhancers	Fetal Intestine Large	intestine
15	chr4:110928800-110929400	Enhancers	Duodenum Mucosa	Duodenum
16	chr4:110928800-110929400	Enhancers	Sigmoid Colon	Sigmoid Colon

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