Variant report

Variant	rs11569121
Chromosome Location	chr4:110929128-110929129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110928984..110929867-chr4:111439412..111440310,2	K562	blood:
2	chr4:110928145..110929651-chr4:111119068..111121092,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170522	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10021697	0.88[AMR][1000 genomes]
rs10857004	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs11098060	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11098061	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11568943	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs11568978	0.87[CEU][hapmap]
rs11569017	0.87[CEU][hapmap];0.88[JPT][hapmap]
rs11569019	0.88[CEU][hapmap];0.94[JPT][hapmap]
rs11569020	0.88[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs11569104	0.88[CEU][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs11569105	0.87[ASW][hapmap];0.85[MKK][hapmap];0.87[YRI][hapmap]
rs11569115	0.87[ASW][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11569126	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2074392	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs2237042	0.81[JPT][hapmap]
rs2237054	0.88[CEU][hapmap]
rs2250724	0.81[JPT][hapmap]
rs2298986	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs2298996	0.85[CEU][hapmap];0.81[JPT][hapmap]
rs2299001	0.87[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3733625	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3733626	0.88[CEU][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes]
rs3796947	0.81[JPT][hapmap]
rs55843825	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56025809	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56725761	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56908291	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs57515702	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60806711	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6823529	0.81[JPT][hapmap]
rs6825106	0.88[CEU][hapmap];0.86[TSI][hapmap]
rs72676965	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72676970	0.81[ASN][1000 genomes]
rs72676971	0.81[ASN][1000 genomes]
rs72896579	0.81[ASN][1000 genomes]
rs730598	0.80[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7661968	0.81[JPT][hapmap]
rs7670908	0.88[CEU][hapmap];0.94[JPT][hapmap];0.86[TSI][hapmap]
rs971695	0.88[CEU][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs971696	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs9991367	0.88[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.86[TSI][hapmap]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110901000-110929600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:110907000-110932400	Weak transcription	Psoas Muscle	Psoas
3	chr4:110910400-110935200	Weak transcription	Pancreas	Pancrea
4	chr4:110910600-110929800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:110919000-110935200	Weak transcription	Left Ventricle	heart
6	chr4:110920800-110935800	Strong transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:110926800-110930000	Enhancers	HepG2	liver
8	chr4:110926800-110930400	Enhancers	Fetal Heart	heart
9	chr4:110926800-110931200	Enhancers	Liver	Liver
10	chr4:110927400-110931000	Strong transcription	Skeletal Muscle Male	skeletal muscle
11	chr4:110927600-110930000	Enhancers	Fetal Intestine Small	intestine
12	chr4:110928000-110930000	Enhancers	Fetal Kidney	kidney
13	chr4:110928400-110931400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:110928400-110931400	Enhancers	Fetal Intestine Large	intestine
15	chr4:110928800-110929400	Enhancers	Duodenum Mucosa	Duodenum
16	chr4:110928800-110929400	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr4:110929000-110929800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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