Variant report

Variant	rs3733625
Chromosome Location	chr4:110933004-110933005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10021697	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11098061	0.81[AMR][1000 genomes]
rs11568943	0.81[JPT][hapmap];0.86[TSI][hapmap]
rs11569017	0.88[JPT][hapmap]
rs11569019	0.94[JPT][hapmap]
rs11569020	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs11569062	1.00[YRI][hapmap]
rs11569104	0.84[TSI][hapmap]
rs11569121	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11569126	1.00[CHB][hapmap];0.96[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17041230	0.84[EUR][1000 genomes]
rs2237042	0.81[JPT][hapmap]
rs2250724	0.81[JPT][hapmap]
rs2255355	0.86[TSI][hapmap]
rs2298986	0.81[JPT][hapmap]
rs2298996	0.81[JPT][hapmap]
rs2299001	1.00[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28533412	0.88[EUR][1000 genomes]
rs3733626	0.92[TSI][hapmap]
rs3796947	0.81[JPT][hapmap];0.86[TSI][hapmap]
rs55843825	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56025809	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56339535	0.84[EUR][1000 genomes]
rs56725761	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56908291	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57515702	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60806711	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6823529	0.81[JPT][hapmap]
rs72676965	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72676970	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72676971	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72896579	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs730598	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7653900	0.84[EUR][1000 genomes]
rs7661968	0.81[JPT][hapmap];0.84[TSI][hapmap]
rs7662362	0.84[EUR][1000 genomes]
rs7670908	0.94[JPT][hapmap]
rs971695	0.86[TSI][hapmap]
rs9991367	0.82[CHB][hapmap];0.94[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3733625	C6orf191	trans	lymphoblastoid	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110910400-110935200	Weak transcription	Pancreas	Pancrea
2	chr4:110919000-110935200	Weak transcription	Left Ventricle	heart
3	chr4:110920800-110935800	Strong transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:110930000-110937200	Weak transcription	Fetal Intestine Small	intestine
5	chr4:110930400-110941600	Weak transcription	Fetal Heart	heart
6	chr4:110930800-110941600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:110931000-110937000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr4:110931000-110937600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:110931000-110941600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:110931200-110934000	Weak transcription	Liver	Liver
11	chr4:110931200-110935200	Weak transcription	Fetal Kidney	kidney
12	chr4:110932600-110934000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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