Variant report

Variant	rs28533412
Chromosome Location	chr4:110950546-110950547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10021697	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1005903	0.83[EUR][1000 genomes]
rs11098061	0.86[ASN][1000 genomes]
rs17041230	0.88[EUR][1000 genomes]
rs2282787	0.83[EUR][1000 genomes]
rs3733625	0.88[EUR][1000 genomes]
rs55843825	0.88[EUR][1000 genomes]
rs56025809	0.88[EUR][1000 genomes]
rs56339535	0.88[EUR][1000 genomes]
rs56908291	0.90[EUR][1000 genomes]
rs57296943	0.86[AMR][1000 genomes]
rs57515702	0.88[EUR][1000 genomes]
rs60806711	0.88[EUR][1000 genomes]
rs72676965	0.88[EUR][1000 genomes]
rs72676970	0.92[EUR][1000 genomes]
rs72676971	0.92[EUR][1000 genomes]
rs72896579	0.92[EUR][1000 genomes]
rs730598	0.92[EUR][1000 genomes]
rs7653900	0.88[EUR][1000 genomes]
rs7662362	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110949600-110953600	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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