Variant report

Variant	rs17041230
Chromosome Location	chr4:110937515-110937516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10010695	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10021697	0.86[EUR][1000 genomes]
rs1005903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857004	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11098060	0.92[AMR][1000 genomes]
rs11569104	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2074392	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237053	0.84[CHB][hapmap]
rs2282787	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28533412	0.88[EUR][1000 genomes]
rs3733625	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs3733626	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55843825	0.84[EUR][1000 genomes]
rs56025809	0.84[EUR][1000 genomes]
rs56339535	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56908291	0.83[EUR][1000 genomes]
rs57515702	0.84[EUR][1000 genomes]
rs60806711	0.84[EUR][1000 genomes]
rs6825106	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs72676965	0.84[EUR][1000 genomes]
rs72676970	0.81[EUR][1000 genomes]
rs72676971	0.81[EUR][1000 genomes]
rs72896579	0.81[EUR][1000 genomes]
rs730598	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs7653900	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7662362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971695	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971696	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110930400-110941600	Weak transcription	Fetal Heart	heart
2	chr4:110930800-110941600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:110931000-110937600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:110931000-110941600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:110935400-110941200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:110935600-110941200	Weak transcription	Fetal Kidney	kidney
7	chr4:110935800-110937600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:110935800-110941000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:110937400-110938000	Enhancers	HUES64 Cell Line	embryonic stem cell

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