Variant report
| Variant | rs730598 |
|---|---|
| Chromosome Location | chr4:110951627-110951628 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:110949680..110952155-chr4:111118914..111121728,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000170522 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10021697 | 0.93[EUR][1000 genomes] |
| rs11569017 | 0.88[JPT][hapmap] |
| rs11569019 | 0.87[JPT][hapmap] |
| rs11569020 | 0.87[JPT][hapmap] |
| rs11569121 | 0.80[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs11569126 | 0.80[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17041230 | 0.81[EUR][1000 genomes] |
| rs2237042 | 0.80[JPT][hapmap] |
| rs2298986 | 0.80[JPT][hapmap] |
| rs2299001 | 0.80[CHB][hapmap];1.00[JPT][hapmap] |
| rs28533412 | 0.92[EUR][1000 genomes] |
| rs3733625 | 1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs55712924 | 1.00[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs55843825 | 0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs56025809 | 0.96[EUR][1000 genomes] |
| rs56339535 | 0.81[EUR][1000 genomes] |
| rs56725761 | 0.81[ASN][1000 genomes] |
| rs56908291 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs57515702 | 0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs60806711 | 0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs61190460 | 1.00[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72676965 | 0.96[EUR][1000 genomes] |
| rs72676970 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs72676971 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72896579 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7653900 | 0.81[EUR][1000 genomes] |
| rs7662362 | 0.81[EUR][1000 genomes] |
| rs7670908 | 0.94[JPT][hapmap] |
| rs9991367 | 0.94[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869392 | chr4:110945459-111235071 | Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:110949600-110953600 | Weak transcription | Brain Germinal Matrix | brain |
