Variant report

Variant	rs11569126
Chromosome Location	chr4:110929653-110929654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110928984..110929867-chr4:111439412..111440310,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10021697	0.85[EUR][1000 genomes]
rs11098060	0.87[CEU][hapmap]
rs11098061	0.91[EUR][1000 genomes]
rs11568943	0.81[JPT][hapmap];0.86[TSI][hapmap]
rs11569017	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs11569019	0.94[JPT][hapmap]
rs11569020	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs11569104	0.84[TSI][hapmap]
rs11569121	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237042	0.81[JPT][hapmap]
rs2250724	0.81[JPT][hapmap]
rs2255355	0.86[TSI][hapmap]
rs2298986	0.81[JPT][hapmap]
rs2298996	0.81[JPT][hapmap]
rs2299001	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3733625	1.00[CHB][hapmap];0.96[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3733626	0.92[TSI][hapmap]
rs3796947	0.81[JPT][hapmap];0.86[TSI][hapmap]
rs55843825	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56025809	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56725761	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56908291	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57515702	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60806711	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6823529	0.81[JPT][hapmap]
rs72676965	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72676970	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72676971	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72896579	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs730598	0.80[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7661968	0.81[JPT][hapmap];0.84[TSI][hapmap]
rs7670908	0.94[JPT][hapmap]
rs971695	0.86[TSI][hapmap]
rs9991367	0.82[CHB][hapmap];0.94[JPT][hapmap]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs11569126	EYA2	trans	lymphoblastoid	seeQTL
rs11569126	NOTUM	trans	brain	seeQTL
rs11569126	COL25A1	cis	brain	seeQTL
rs11569126	LRIT3	cis	brain	seeQTL
rs11569126	GAS7	trans	brain	seeQTL
rs11569126	C6orf191	trans	lymphoblastoid	seeQTL
rs11569126	PITX2	cis	brain	seeQTL
rs11569126	ENPEP	cis	brain	seeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110907000-110932400	Weak transcription	Psoas Muscle	Psoas
2	chr4:110910400-110935200	Weak transcription	Pancreas	Pancrea
3	chr4:110910600-110929800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:110919000-110935200	Weak transcription	Left Ventricle	heart
5	chr4:110920800-110935800	Strong transcription	Skeletal Muscle Female	skeletal muscle
6	chr4:110926800-110930000	Enhancers	HepG2	liver
7	chr4:110926800-110930400	Enhancers	Fetal Heart	heart
8	chr4:110926800-110931200	Enhancers	Liver	Liver
9	chr4:110927400-110931000	Strong transcription	Skeletal Muscle Male	skeletal muscle
10	chr4:110927600-110930000	Enhancers	Fetal Intestine Small	intestine
11	chr4:110928000-110930000	Enhancers	Fetal Kidney	kidney
12	chr4:110928400-110931400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:110928400-110931400	Enhancers	Fetal Intestine Large	intestine
14	chr4:110929000-110929800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:110929600-110930200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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