Variant report

Variant	rs11568943
Chromosome Location	chr4:110883121-110883122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110875646..110878215-chr4:110881372..110883545,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11098060	0.87[CEU][hapmap]
rs11568895	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11568978	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11569017	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11569019	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs11569020	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs11569121	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs11569126	0.81[JPT][hapmap];0.86[TSI][hapmap]
rs11932661	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12374273	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2237042	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2250724	0.87[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2255355	0.87[CEU][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs2298981	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2298982	0.87[CEU][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs2298986	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2298996	0.85[CEU][hapmap];0.88[CHB][hapmap]
rs2299001	0.81[JPT][hapmap];0.93[TSI][hapmap]
rs2347138	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2881560	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35368137	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35860692	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3733625	0.81[JPT][hapmap];0.86[TSI][hapmap]
rs3756261	0.94[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs3756262	0.86[ASN][1000 genomes]
rs3796947	0.87[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4141078	0.92[EUR][1000 genomes]
rs57890638	0.82[ASN][1000 genomes]
rs59744250	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61459968	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6533476	0.86[ASN][1000 genomes]
rs6533477	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6533478	0.86[ASN][1000 genomes]
rs6533479	0.86[ASN][1000 genomes]
rs6823529	0.87[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6825106	0.93[TSI][hapmap]
rs72894512	0.86[ASN][1000 genomes]
rs72894516	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7661766	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7661968	0.80[CHB][hapmap];0.96[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7670908	0.94[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs7699332	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9991367	0.88[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110860600-110906600	Weak transcription	Psoas Muscle	Psoas
2	chr4:110869600-110888000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:110872000-110883600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr4:110872000-110885200	Weak transcription	Left Ventricle	heart
5	chr4:110874400-110889000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:110875600-110909800	Weak transcription	Pancreas	Pancrea
7	chr4:110880200-110883600	Strong transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:110883000-110883400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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