Variant report

Variant	rs57890638
Chromosome Location	chr4:110857026-110857027
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11568895	0.85[ASN][1000 genomes]
rs11568943	0.82[ASN][1000 genomes]
rs11932661	0.85[ASN][1000 genomes]
rs2237042	0.83[ASN][1000 genomes]
rs2250724	0.83[ASN][1000 genomes]
rs2298981	0.83[ASN][1000 genomes]
rs2298986	0.83[ASN][1000 genomes]
rs2347138	0.85[ASN][1000 genomes]
rs2881560	0.84[ASN][1000 genomes]
rs35368137	0.85[ASN][1000 genomes]
rs3796947	0.84[ASN][1000 genomes]
rs59744250	0.83[ASN][1000 genomes]
rs61459968	0.85[ASN][1000 genomes]
rs6823529	0.83[ASN][1000 genomes]
rs7661968	0.85[ASN][1000 genomes]
rs7699332	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv1813951	chr4:110840748-110862637	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110843000-110876200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:110852400-110873800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:110853800-110871200	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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