Variant report

Variant	rs2298981
Chromosome Location	chr4:110846517-110846518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110838362..110841252-chr4:110845200..110847898,2	K562	blood:
2	chr4:110838362..110842367-chr4:110842541..110847898,5	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11568895	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11568943	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11568978	0.89[EUR][1000 genomes]
rs11932661	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12374273	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2237042	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2250724	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2255355	0.81[EUR][1000 genomes]
rs2298982	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2298986	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2347138	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2881560	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35368137	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35860692	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3756261	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3756262	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3796947	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4141078	0.96[EUR][1000 genomes]
rs57890638	0.83[ASN][1000 genomes]
rs59744250	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61459968	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6533476	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6533477	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6533478	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6533479	0.92[ASN][1000 genomes]
rs6823529	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894512	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72894516	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7661766	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7661968	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7699332	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv1805263	chr4:110840722-110848490	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1804723	chr4:110840748-110846796	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1804837	chr4:110840748-110846796	Weak transcription Enhancers Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv1808922	chr4:110840748-110846796	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1813652	chr4:110840748-110846796	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1813951	chr4:110840748-110862637	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110836800-110849400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:110840600-110849200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:110842800-110849200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:110843000-110876200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:110843200-110849200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:110843200-110851000	Weak transcription	Pancreas	Pancrea
7	chr4:110844000-110849400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:110844000-110850400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:110845600-110846600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:110845800-110847000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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