Variant report

Variant	rs6533477
Chromosome Location	chr4:110828803-110828804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11568895	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11568943	0.87[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11568978	0.87[CEU][hapmap]
rs11569017	1.00[CHB][hapmap]
rs11569019	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs11569020	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs11932661	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12374273	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2237042	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2250724	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2255355	0.87[TSI][hapmap]
rs2298981	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2298982	1.00[CEU][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs2298986	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2298996	0.94[CHB][hapmap]
rs2299001	0.81[TSI][hapmap]
rs2347138	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2881560	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35368137	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35860692	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3756261	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756262	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3796947	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4141078	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs59744250	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61459968	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6533476	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533478	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533479	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6823529	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6825106	0.81[TSI][hapmap]
rs72894512	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894516	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661766	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7661968	0.87[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.80[MEX][hapmap];0.90[ASN][1000 genomes]
rs7670908	1.00[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap]
rs7699332	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9991367	0.94[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110825000-110834000	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links