Variant report

Variant	rs11569017
Chromosome Location	chr4:110902111-110902112
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110734994..110736731-chr4:110899705..110902509,2	K562	blood:

Variant related genes	Relation type
ENSG00000109534	Chromatin interaction
ENSG00000272795	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11568943	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11568978	0.82[AMR][1000 genomes]
rs11569019	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11569020	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11569121	0.87[CEU][hapmap];0.88[JPT][hapmap]
rs11569126	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs2237042	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs2237054	0.86[EUR][1000 genomes]
rs2250724	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2298986	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs2298996	0.94[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2299001	1.00[CEU][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs3733625	0.88[JPT][hapmap]
rs3756261	1.00[CHB][hapmap]
rs3796947	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6823529	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6825106	0.84[EUR][1000 genomes]
rs730598	0.88[JPT][hapmap]
rs7661968	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs7670908	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs881841	0.84[EUR][1000 genomes]
rs9991367	0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9995637	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110860600-110906600	Weak transcription	Psoas Muscle	Psoas
2	chr4:110875600-110909800	Weak transcription	Pancreas	Pancrea
3	chr4:110885800-110909800	Weak transcription	Left Ventricle	heart
4	chr4:110893800-110909600	Weak transcription	Fetal Heart	heart
5	chr4:110895000-110909600	Weak transcription	Fetal Intestine Small	intestine
6	chr4:110895000-110928600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:110898000-110906600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr4:110899400-110909800	Weak transcription	Right Atrium	heart
9	chr4:110899600-110902200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:110899600-110902200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr4:110899600-110902800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:110900800-110902200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr4:110900800-110902200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:110900800-110902200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:110900800-110902400	Enhancers	NHEK	skin
16	chr4:110900800-110902600	Enhancers	HMEC	breast
17	chr4:110900800-110902600	Enhancers	HSMM	muscle
18	chr4:110900800-110902800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:110900800-110905000	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr4:110901000-110902200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:110901000-110902200	Enhancers	HSMMtube	muscle
22	chr4:110901000-110902600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr4:110901000-110902600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr4:110901000-110905200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr4:110901000-110929600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:110901200-110902200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:110901200-110902200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:110901200-110902400	Flanking Active TSS	NH-A	brain
29	chr4:110901400-110902200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:110901400-110902200	Flanking Active TSS	Osteobl	bone
31	chr4:110901400-110920800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr4:110901600-110902400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr4:110901600-110904600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr4:110901800-110902200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr4:110902000-110906800	Weak transcription	NHDF-Ad	bronchial
36	chr4:110902000-110907200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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