Variant report

Variant	rs3756261
Chromosome Location	chr4:110832306-110832307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110831007..110832893-chr4:110834036..110836190,2	K562	blood:

Variant related genes	Relation type
ENSG00000138798	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11568895	0.90[ASN][1000 genomes]
rs11568943	0.94[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs11569017	1.00[CHB][hapmap]
rs11569019	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs11569020	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs11932661	0.90[ASN][1000 genomes]
rs12374273	0.83[ASN][1000 genomes]
rs2237042	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2250724	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.80[MEX][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2298981	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2298982	0.87[CEU][hapmap]
rs2298986	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs2298996	0.94[CHB][hapmap]
rs2347138	0.90[ASN][1000 genomes]
rs2881560	0.88[ASN][1000 genomes]
rs35368137	0.90[ASN][1000 genomes]
rs35860692	0.84[ASN][1000 genomes]
rs3756262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3796947	0.87[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs59744250	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61459968	0.90[ASN][1000 genomes]
rs6533476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533477	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6823529	0.87[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.80[MEX][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72894512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894516	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661766	0.85[ASN][1000 genomes]
rs7661968	0.91[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.80[MEX][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7670908	1.00[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap]
rs7699332	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9685587	0.84[GIH][hapmap]
rs9991367	0.94[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110825000-110834000	Weak transcription	Psoas Muscle	Psoas
2	chr4:110830400-110833800	Weak transcription	Fetal Lung	lung
3	chr4:110831400-110833000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:110831600-110834000	Weak transcription	Fetal Intestine Small	intestine
5	chr4:110832000-110832800	Enhancers	Fetal Intestine Large	intestine

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