Variant report

Variant	rs72894516
Chromosome Location	chr4:110830106-110830107
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr4:110829924-110830160	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr4:110830055-110830115	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
EGF	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11568895	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11568943	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11932661	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12374273	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2237042	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2250724	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2298981	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2298982	0.85[EUR][1000 genomes]
rs2298986	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2347138	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2881560	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35368137	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35860692	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3756261	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756262	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3796947	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4141078	0.85[EUR][1000 genomes]
rs59744250	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61459968	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6533476	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533477	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533478	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533479	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6823529	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72894512	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7661766	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7661968	0.90[ASN][1000 genomes]
rs7699332	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110825000-110834000	Weak transcription	Psoas Muscle	Psoas
2	chr4:110829800-110830400	Enhancers	Fetal Lung	lung

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