Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110949680..110952155-chr4:111118914..111121728,2	K562	blood:

Variant related genes	Relation type
ENSG00000170522	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10021697	0.93[EUR][1000 genomes]
rs11569121	0.81[ASN][1000 genomes]
rs11569126	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17041230	0.81[EUR][1000 genomes]
rs28533412	0.92[EUR][1000 genomes]
rs3733625	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55712924	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs55843825	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56025809	0.96[EUR][1000 genomes]
rs56339535	0.81[EUR][1000 genomes]
rs56725761	0.81[ASN][1000 genomes]
rs56908291	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57515702	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60806711	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61190460	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72676965	0.96[EUR][1000 genomes]
rs72676970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72896579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs730598	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653900	0.81[EUR][1000 genomes]
rs7662362	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110949600-110953600	Weak transcription	Brain Germinal Matrix	brain
2	chr4:110950600-110951400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:110950600-110951400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:110951000-110951400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:110951000-110951600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search: