Variant report

Variant	rs61190460
Chromosome Location	chr4:110957083-110957084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55712924	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55879558	0.83[EUR][1000 genomes]
rs56908291	0.82[AMR][1000 genomes]
rs57296943	0.83[EUR][1000 genomes]
rs72676970	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72676971	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72896579	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs730598	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110953200-110958000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr4:110953400-110958000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:110955600-110958000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:110956400-110957600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:110956600-110962800	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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