Variant report

Variant	rs7697711
Chromosome Location	chr4:77025368-77025369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77024140..77027603-chr4:77067488..77070849,3	K562	blood:
2	chr4:77022675..77026827-chr4:77067488..77070849,4	K562	blood:

Variant related genes	Relation type
ENSG00000138750	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10017484	1.00[CHB][hapmap]
rs10022137	1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[ASN][1000 genomes]
rs10022519	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10030683	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11097232	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12331521	1.00[ASN][1000 genomes]
rs12508223	0.89[MEX][hapmap];0.82[AMR][1000 genomes]
rs13139234	1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.92[ASN][1000 genomes]
rs17001248	0.88[YRI][hapmap]
rs17001290	0.88[YRI][hapmap]
rs17001352	1.00[YRI][hapmap]
rs4241582	0.87[ASW][hapmap]
rs4241584	0.87[ASW][hapmap]
rs4241587	0.87[ASW][hapmap]
rs4241591	1.00[CHB][hapmap];0.89[MEX][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4274876	0.92[ASN][1000 genomes]
rs4440243	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4624679	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4859613	0.92[ASN][1000 genomes]
rs4859619	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4859622	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6532181	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6532230	0.85[AMR][1000 genomes]
rs6814012	1.00[CHB][hapmap]
rs6814817	1.00[CHB][hapmap]
rs6857166	0.85[AMR][1000 genomes]
rs7654988	1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[ASN][1000 genomes]
rs7682766	0.98[GIH][hapmap]
rs9990550	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9992976	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1009047	chr4:76989180-77077885	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7697711	CCDC158	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77015200-77025400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr4:77017000-77034400	Weak transcription	Right Ventricle	heart
3	chr4:77021200-77026600	Weak transcription	Brain Hippocampus Middle	brain
4	chr4:77024000-77032200	Weak transcription	Left Ventricle	heart
5	chr4:77024800-77027000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:77025000-77025800	Strong transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links