Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10017484	1.00[CHB][hapmap]
rs10022137	0.92[ASN][1000 genomes]
rs10022519	0.92[ASN][1000 genomes]
rs10030683	1.00[ASN][1000 genomes]
rs11097232	0.92[ASN][1000 genomes]
rs12331521	0.92[ASN][1000 genomes]
rs13139234	1.00[ASN][1000 genomes]
rs4241591	0.92[ASN][1000 genomes]
rs4333205	1.00[CHB][hapmap]
rs4440243	0.92[ASN][1000 genomes]
rs4624679	0.84[ASN][1000 genomes]
rs4859613	0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859619	0.84[ASN][1000 genomes]
rs6532181	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6814012	1.00[CHB][hapmap]
rs6814817	1.00[CHB][hapmap]
rs6828078	0.93[AFR][1000 genomes]
rs6849653	0.94[AFR][1000 genomes]
rs7654988	0.92[ASN][1000 genomes]
rs7662679	0.91[AFR][1000 genomes]
rs7670789	1.00[CHB][hapmap]
rs7683914	0.91[AFR][1000 genomes]
rs7697711	0.92[ASN][1000 genomes]
rs9990550	0.92[ASN][1000 genomes]
rs9992976	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1009047	chr4:76989180-77077885	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs4274876	NAAA	cis	lung	GTEx
rs4274876	NAAA	cis	Nerve Tibial	GTEx
rs4274876	NAAA	cis	Esophagus Mucosa	GTEx
rs4274876	NAAA	cis	Esophagus Muscularis	GTEx
rs4274876	NAAA	cis	Muscle Skeletal	GTEx
rs4274876	NAAA	cis	Adipose Subcutaneous	GTEx
rs4274876	ART3	cis	Nerve Tibial	GTEx

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76997000-77007200	Weak transcription	Fetal Brain Male	brain
2	chr4:76997000-77008000	Weak transcription	Brain Angular Gyrus	brain
3	chr4:76999000-77008200	Weak transcription	Right Ventricle	heart
4	chr4:76999400-77004200	Weak transcription	Psoas Muscle	Psoas
5	chr4:76999600-77008000	Weak transcription	Liver	Liver
6	chr4:77001000-77005800	Weak transcription	Fetal Heart	heart
7	chr4:77001000-77006200	Weak transcription	Left Ventricle	heart
8	chr4:77003200-77005000	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr4:77003600-77004800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr4:77003800-77008000	Weak transcription	Brain Anterior Caudate	brain
11	chr4:77003800-77008000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr4:77003800-77008000	Weak transcription	K562	blood
13	chr4:77003800-77008200	Weak transcription	Fetal Thymus	thymus

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