Variant report

Variant	rs7697737
Chromosome Location	chr4:175591333-175591334
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10002597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10004035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs10013313	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10015565	1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs10017315	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28481470	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826282	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7673685	1.00[CHD][hapmap]
rs7682248	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7686453	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs9685119	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9998793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv880584	chr4:175505749-175644689	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175585000-175593200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:175589800-175591800	Enhancers	A549	lung
3	chr4:175590200-175591800	Enhancers	Fetal Intestine Large	intestine
4	chr4:175590200-175595000	Weak transcription	Fetal Intestine Small	intestine
5	chr4:175590600-175593200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:175591000-175593000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:175591000-175593200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:175591000-175593400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:175591000-175593600	Weak transcription	HMEC	breast
10	chr4:175591000-175595400	Weak transcription	Hela-S3	cervix
11	chr4:175591200-175593000	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links