Variant report

Variant	rs7700285
Chromosome Location	chr5:164656742-164656743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10068870	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11747437	0.80[AMR][1000 genomes]
rs11747503	0.80[AMR][1000 genomes]
rs11748440	0.86[ASN][1000 genomes]
rs11748996	0.80[AMR][1000 genomes]
rs11749187	0.80[AMR][1000 genomes]
rs13159284	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13178865	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13181477	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13186057	0.80[AMR][1000 genomes]
rs1578900	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17333449	0.81[AMR][1000 genomes]
rs1833718	0.90[ASN][1000 genomes]
rs35203349	0.86[ASN][1000 genomes]
rs4130573	0.81[AMR][1000 genomes]
rs4130574	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4367315	0.81[AMR][1000 genomes]
rs4868918	0.86[ASN][1000 genomes]
rs4868919	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4868920	0.86[ASN][1000 genomes]
rs6896863	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033866	chr5:164419608-164677758	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1027103	chr5:164606534-164694498	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164654600-164656800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr5:164655000-164656800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:164655000-164657400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr5:164655800-164657200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:164656400-164656800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:164656400-164657400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr5:164656400-164657800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:164656400-164658000	Enhancers	Primary hematopoietic stem cells	blood
9	chr5:164656600-164657800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:164656600-164658200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr5:164656600-164658600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr5:164656600-164658600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:164656600-164658800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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