Variant report

Variant	rs4367315
Chromosome Location	chr5:164660539-164660540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10064661	0.87[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10067676	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10076780	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10076821	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10866752	0.94[CHD][hapmap];0.81[MEX][hapmap]
rs11747004	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11747437	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11747503	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11748440	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11748996	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11749187	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12519113	0.82[ASN][1000 genomes]
rs12519127	0.81[ASN][1000 genomes]
rs13186057	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1578900	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17333449	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17391889	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35203349	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35665300	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4130573	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4130574	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4291037	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4868753	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4868918	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4868919	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4868920	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62385686	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7700285	0.81[AMR][1000 genomes]
rs7715290	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7720784	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7731911	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033866	chr5:164419608-164677758	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1027103	chr5:164606534-164694498	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4367315	FLT3	trans	cerebellum	SCAN
rs4367315	GOT1L1	trans	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164657800-164660600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr5:164657800-164660600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:164657800-164660800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:164658600-164660600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:164659400-164660800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr5:164659400-164662400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:164660200-164660600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:164660200-164660600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:164660200-164660800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:164660200-164660800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr5:164660400-164661600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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