Variant report

Variant	rs10064661
Chromosome Location	chr5:164668926-164668927
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NUDCD2-6	chr5:164668635-164668941	XLOC_005071
2	lnc-NUDCD2-6	chr5:164668635-164668941	XLOC_005071

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10067676	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10076780	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10076821	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10866752	0.85[CEU][hapmap];0.89[CHB][hapmap]
rs11747004	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11747437	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11747503	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11748440	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11748996	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11749187	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12519113	0.89[ASN][1000 genomes]
rs12519127	0.87[ASN][1000 genomes]
rs13186057	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1578900	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17333449	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17391889	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35203349	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35665300	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4130573	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4130574	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4291037	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4367315	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4868753	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4868918	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4868919	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4868920	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62385686	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7715290	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7720784	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7731911	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033866	chr5:164419608-164677758	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1027103	chr5:164606534-164694498	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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