Variant report

Variant	rs11747004
Chromosome Location	chr5:164674149-164674150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10064661	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10067676	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10076780	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10076821	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10866752	0.89[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap]
rs11747437	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11747503	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11748440	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11748996	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11749187	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12519113	0.90[ASN][1000 genomes]
rs12519127	0.89[ASN][1000 genomes]
rs13186057	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1433004	0.83[YRI][hapmap]
rs1578900	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17333449	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17391889	0.89[EUR][1000 genomes]
rs35203349	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35665300	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4130573	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4130574	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4291037	0.92[EUR][1000 genomes]
rs4367315	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4868753	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4868918	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4868919	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4868920	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62385686	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7715290	0.93[EUR][1000 genomes]
rs7720784	0.92[EUR][1000 genomes]
rs7731911	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033866	chr5:164419608-164677758	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1027103	chr5:164606534-164694498	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164671400-164674800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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