Variant report
Variant | rs7701350 |
---|---|
Chromosome Location | chr5:57506467-57506468 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr5:57503850..57506829-chr5:57754542..57757314,3 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000145632 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1035473 | 0.87[ASN][1000 genomes] |
rs10513135 | 0.87[ASN][1000 genomes] |
rs11744441 | 0.87[ASN][1000 genomes] |
rs11745219 | 0.82[ASN][1000 genomes] |
rs11746013 | 0.82[ASN][1000 genomes] |
rs11747017 | 0.82[ASN][1000 genomes] |
rs11749817 | 0.87[ASN][1000 genomes] |
rs12515401 | 1.00[JPT][hapmap] |
rs12655439 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs1971059 | 0.82[ASN][1000 genomes] |
rs1971060 | 0.82[ASN][1000 genomes] |
rs2409007 | 0.82[ASN][1000 genomes] |
rs4700259 | 1.00[ASN][1000 genomes] |
rs4700273 | 1.00[CHB][hapmap] |
rs66884124 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs72755718 | 0.87[ASN][1000 genomes] |
rs72755724 | 0.87[ASN][1000 genomes] |
rs72755726 | 0.82[ASN][1000 genomes] |
rs72755728 | 0.87[ASN][1000 genomes] |
rs72755729 | 0.87[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv432746 | chr5:57502859-57547419 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:57505400-57506800 | Enhancers | Pancreatic Islets | Pancreatic Islet |