Variant report

Variant	rs11746013
Chromosome Location	chr5:57540522-57540523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57538142..57540625-chr5:57748575..57750284,2	MCF-7	breast:
2	chr5:57527499..57530106-chr5:57539853..57541635,2	MCF-7	breast:
3	chr5:57535441..57538302-chr5:57538781..57541164,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1035473	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10513135	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11737991	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11738845	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11740290	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11742619	1.00[YRI][hapmap]
rs11744441	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11745219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11746649	0.81[AFR][1000 genomes]
rs11747017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11749817	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11750320	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11953112	0.86[CHB][hapmap]
rs12515401	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17696079	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17764094	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1971059	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1971060	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2409007	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700259	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4700268	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4700269	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4700273	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4700283	0.86[CHB][hapmap]
rs56262220	0.81[AFR][1000 genomes]
rs66884124	0.82[ASN][1000 genomes]
rs72755718	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72755724	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72755726	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72755728	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72755729	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72755745	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72755750	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72755767	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7701350	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7733184	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs969473	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57526200-57544000	Weak transcription	Aorta	Aorta
2	chr5:57534800-57555200	Weak transcription	Left Ventricle	heart
3	chr5:57535400-57540600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:57535400-57540800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr5:57536200-57541400	Weak transcription	Right Atrium	heart
6	chr5:57536200-57542200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr5:57536400-57540800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:57536600-57544200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr5:57536800-57542200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:57537400-57541800	Weak transcription	NHDF-Ad	bronchial
11	chr5:57537400-57542200	Weak transcription	Osteobl	bone
12	chr5:57537600-57542200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr5:57537600-57542200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:57537600-57542200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:57537600-57542400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:57537600-57542400	Weak transcription	NHLF	lung
17	chr5:57537600-57542600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:57537800-57540800	Weak transcription	A549	lung
19	chr5:57537800-57541000	Enhancers	HUVEC	blood vessel
20	chr5:57537800-57542200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:57537800-57542200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr5:57538000-57540800	Weak transcription	Hela-S3	cervix
23	chr5:57540200-57540800	Enhancers	Adipose Nuclei	Adipose
24	chr5:57540200-57541600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr5:57540400-57540800	Enhancers	Psoas Muscle	Psoas
26	chr5:57540400-57544200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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