Variant report

Variant	rs7703202
Chromosome Location	chr5:147343536-147343537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72829024	0.80[AFR][1000 genomes]
rs7727286	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv2760927	chr5:147327342-147343763	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147326600-147345200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:147336400-147352800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:147336600-147343600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:147336600-147352600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:147337600-147343800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:147341200-147343600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:147341400-147343600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:147343000-147343600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:147343000-147343800	Enhancers	Primary hematopoietic stem cells	blood
10	chr5:147343000-147344200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr5:147343000-147344600	Enhancers	HUVEC	blood vessel
12	chr5:147343000-147345200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr5:147343000-147346400	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr5:147343200-147343600	Enhancers	Fetal Lung	lung
15	chr5:147343200-147343800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr5:147343200-147344400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:147343200-147344400	Enhancers	Brain Cingulate Gyrus	brain
18	chr5:147343200-147345200	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr5:147343200-147347800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:147343400-147343800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:147343400-147343800	Enhancers	Esophagus	oesophagus
22	chr5:147343400-147343800	Enhancers	Lung	lung
23	chr5:147343400-147343800	Enhancers	Spleen	Spleen
24	chr5:147343400-147343800	Enhancers	Hela-S3	cervix
25	chr5:147343400-147344000	Enhancers	Gastric	stomach
26	chr5:147343400-147344000	Enhancers	Pancreas	Pancrea
27	chr5:147343400-147344200	Strong transcription	H9 Cell Line	embryonic stem cell
28	chr5:147343400-147344200	Enhancers	Right Atrium	heart
29	chr5:147343400-147344200	Enhancers	Stomach Mucosa	stomach
30	chr5:147343400-147344400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr5:147343400-147344400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr5:147343400-147344800	Enhancers	Brain Hippocampus Middle	brain
33	chr5:147343400-147345200	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr5:147343400-147345200	Enhancers	Adipose Nuclei	Adipose
35	chr5:147343400-147345400	Strong transcription	HUES6 Cell Line	embryonic stem cell

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